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GVQW1 (GVQW motif containing 1)

Identity

Alias_namesTIGD1L2
tigger transposable element derived 1-like 2
Alias_symbol (synonym)bA205M20.5
Other alias
HGNC (Hugo) GVQW1
LocusID (NCBI) 101362076
Atlas_Id 64129
Location 9p21.1  [Link to chromosome band 9p21]
Location_base_pair Starts at 32566789 and ends at 32568621 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)GVQW1   31424
Cards
Entrez_Gene (NCBI)GVQW1  101362076  GVQW motif containing 1
AliasesTIGD1L2; bA205M20.5
GeneCards (Weizmann)GVQW1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:32566789-32568621 [Contig_View]  GVQW1 [Vega]
TCGA cBioPortalGVQW1
AceView (NCBI)GVQW1
Genatlas (Paris)GVQW1
WikiGenes101362076
SOURCE (Princeton)GVQW1
Genetics Home Reference (NIH)GVQW1
Genomic and cartography
GoldenPath hg38 (UCSC)GVQW1  -     chr9:32566789-32568621 +  9p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GVQW1  -     9p21.1   [Description]    (hg19-Feb_2009)
EnsemblGVQW1 - 9p21.1 [CytoView hg19]  GVQW1 - 9p21.1 [CytoView hg38]
Mapping of homologs : NCBIGVQW1 [Mapview hg19]  GVQW1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098413
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GVQW1
Cluster EST : UnigeneHs.664395 [ NCBI ]
CGAP (NCI)Hs.664395
Gene ExpressionGVQW1 [ NCBI-GEO ]   GVQW1 [ EBI - ARRAY_EXPRESS ]   GVQW1 [ SEEK ]   GVQW1 [ MEM ]
Gene Expression Viewer (FireBrowse)GVQW1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101362076
GTEX Portal (Tissue expression)GVQW1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7I0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7I0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7I0
Splice isoforms : SwissVarQ8N7I0
PhosPhoSitePlusQ8N7I0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GVQW1
DMDM Disease mutations101362076
Blocks (Seattle)GVQW1
SuperfamilyQ8N7I0
Peptide AtlasQ8N7I0
Protein Interaction databases
DIP (DOE-UCLA)Q8N7I0
IntAct (EBI)Q8N7I0
BioGRIDGVQW1
STRING (EMBL)GVQW1
ZODIACGVQW1
Ontologies - Pathways
QuickGOQ8N7I0
Ontology : AmiGOskeletal muscle fiber development  
Ontology : EGO-EBIskeletal muscle fiber development  
NDEx NetworkGVQW1
Atlas of Cancer Signalling NetworkGVQW1
Wikipedia pathwaysGVQW1
Orthology - Evolution
OrthoDB101362076
Phylogenetic Trees/Animal Genes : TreeFamGVQW1
HOVERGENQ8N7I0
HOGENOMQ8N7I0
Homologs : HomoloGeneGVQW1
Homology/Alignments : Family Browser (UCSC)GVQW1
Gene fusions - Rearrangements
Tumor Fusion PortalGVQW1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGVQW1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GVQW1
dbVarGVQW1
ClinVarGVQW1
1000_GenomesGVQW1 
Exome Variant ServerGVQW1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP101362076
Genomic Variants (DGV)GVQW1 [DGVbeta]
DECIPHERGVQW1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGVQW1 
Mutations
ICGC Data PortalGVQW1 
TCGA Data PortalGVQW1 
Broad Tumor PortalGVQW1
OASIS PortalGVQW1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGVQW1
BioMutasearch GVQW1
DgiDB (Drug Gene Interaction Database)GVQW1
DoCM (Curated mutations)GVQW1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GVQW1 (select a term)
intoGenGVQW1
Cancer3DGVQW1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGVQW1
MedgenGVQW1
Genetic Testing Registry GVQW1
NextProtQ8N7I0 [Medical]
TSGene101362076
GENETestsGVQW1
Target ValidationGVQW1
Huge Navigator GVQW1 [HugePedia]
snp3D : Map Gene to Disease101362076
BioCentury BCIQGVQW1
ClinGenGVQW1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101362076
Chemical/Pharm GKB GenePA166049005
Clinical trialGVQW1
Miscellaneous
canSAR (ICR)GVQW1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineGVQW1
EVEXGVQW1
GoPubMedGVQW1
iHOPGVQW1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:32:20 CET 2017

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