Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GXYLT1 (glucoside xylosyltransferase 1)

Identity

Alias_namesGLT8D3
glycosyltransferase 8 domain containing 3
Alias_symbol (synonym)FLJ43151
Other alias
HGNC (Hugo) GXYLT1
LocusID (NCBI) 283464
Atlas_Id 64130
Location 12q12  [Link to chromosome band 12q12]
Location_base_pair Starts at 42081846 and ends at 42144871 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDC42 (1p36.12) / GXYLT1 (12q12)GXYLT1 (12q12) / PPHLN1 (12q12)LRRK2 (12q12) / GXYLT1 (12q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GXYLT1   27482
Cards
Entrez_Gene (NCBI)GXYLT1  283464  glucoside xylosyltransferase 1
AliasesGLT8D3
GeneCards (Weizmann)GXYLT1
Ensembl hg19 (Hinxton)ENSG00000151233 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151233 [Gene_View]  chr12:42081846-42144871 [Contig_View]  GXYLT1 [Vega]
ICGC DataPortalENSG00000151233
TCGA cBioPortalGXYLT1
AceView (NCBI)GXYLT1
Genatlas (Paris)GXYLT1
WikiGenes283464
SOURCE (Princeton)GXYLT1
Genetics Home Reference (NIH)GXYLT1
Genomic and cartography
GoldenPath hg38 (UCSC)GXYLT1  -     chr12:42081846-42144871 -  12q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GXYLT1  -     12q12   [Description]    (hg19-Feb_2009)
EnsemblGXYLT1 - 12q12 [CytoView hg19]  GXYLT1 - 12q12 [CytoView hg38]
Mapping of homologs : NCBIGXYLT1 [Mapview hg19]  GXYLT1 [Mapview hg38]
OMIM613321   
Gene and transcription
Genbank (Entrez)AK021504 AK021752 AK125141 AL832209 BC015597
RefSeq transcript (Entrez)NM_001099650 NM_173601
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GXYLT1
Cluster EST : UnigeneHs.259347 [ NCBI ]
CGAP (NCI)Hs.259347
Alternative Splicing GalleryENSG00000151233
Gene ExpressionGXYLT1 [ NCBI-GEO ]   GXYLT1 [ EBI - ARRAY_EXPRESS ]   GXYLT1 [ SEEK ]   GXYLT1 [ MEM ]
Gene Expression Viewer (FireBrowse)GXYLT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283464
GTEX Portal (Tissue expression)GXYLT1
Human Protein AtlasENSG00000151233-GXYLT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G148   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G148  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G148
Splice isoforms : SwissVarQ4G148
Catalytic activity : Enzyme2.4.2.n2 [ Enzyme-Expasy ]   2.4.2.n22.4.2.n2 [ IntEnz-EBI ]   2.4.2.n2 [ BRENDA ]   2.4.2.n2 [ KEGG ]   
PhosPhoSitePlusQ4G148
Domains : Interpro (EBI)Glyco_trans_8    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_8 (PF01501)   
Domain families : Pfam (NCBI)pfam01501   
Conserved Domain (NCBI)GXYLT1
DMDM Disease mutations283464
Blocks (Seattle)GXYLT1
SuperfamilyQ4G148
Human Protein Atlas [tissue]ENSG00000151233-GXYLT1 [tissue]
Peptide AtlasQ4G148
IPIIPI00217652   IPI00791310   
Protein Interaction databases
DIP (DOE-UCLA)Q4G148
IntAct (EBI)Q4G148
FunCoupENSG00000151233
BioGRIDGXYLT1
STRING (EMBL)GXYLT1
ZODIACGXYLT1
Ontologies - Pathways
QuickGOQ4G148
Ontology : AmiGOintegral component of membrane  O-glycan processing  UDP-xylosyltransferase activity  
Ontology : EGO-EBIintegral component of membrane  O-glycan processing  UDP-xylosyltransferase activity  
Pathways : KEGGOther types of O-glycan biosynthesis   
NDEx NetworkGXYLT1
Atlas of Cancer Signalling NetworkGXYLT1
Wikipedia pathwaysGXYLT1
Orthology - Evolution
OrthoDB283464
GeneTree (enSembl)ENSG00000151233
Phylogenetic Trees/Animal Genes : TreeFamGXYLT1
HOVERGENQ4G148
HOGENOMQ4G148
Homologs : HomoloGeneGXYLT1
Homology/Alignments : Family Browser (UCSC)GXYLT1
Gene fusions - Rearrangements
Fusion: Tumor Portal GXYLT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGXYLT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GXYLT1
dbVarGXYLT1
ClinVarGXYLT1
1000_GenomesGXYLT1 
Exome Variant ServerGXYLT1
ExAC (Exome Aggregation Consortium)ENSG00000151233
GNOMAD BrowserENSG00000151233
Genetic variants : HAPMAP283464
Genomic Variants (DGV)GXYLT1 [DGVbeta]
DECIPHERGXYLT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGXYLT1 
Mutations
ICGC Data PortalGXYLT1 
TCGA Data PortalGXYLT1 
Broad Tumor PortalGXYLT1
OASIS PortalGXYLT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGXYLT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGXYLT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GXYLT1
DgiDB (Drug Gene Interaction Database)GXYLT1
DoCM (Curated mutations)GXYLT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GXYLT1 (select a term)
intoGenGXYLT1
Cancer3DGXYLT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613321   
Orphanet
MedgenGXYLT1
Genetic Testing Registry GXYLT1
NextProtQ4G148 [Medical]
TSGene283464
GENETestsGXYLT1
Target ValidationGXYLT1
Huge Navigator GXYLT1 [HugePedia]
snp3D : Map Gene to Disease283464
BioCentury BCIQGXYLT1
ClinGenGXYLT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283464
Chemical/Pharm GKB GenePA165512868
Clinical trialGXYLT1
Miscellaneous
canSAR (ICR)GXYLT1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGXYLT1
EVEXGXYLT1
GoPubMedGXYLT1
iHOPGXYLT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:50:04 CET 2017

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