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GXYLT2 (glucoside xylosyltransferase 2)

Identity

Alias (NCBI)GLT8D4
HGNC (Hugo) GXYLT2
HGNC Previous nameGLT8D4
HGNC Previous nameglycosyltransferase 8 domain containing 4
LocusID (NCBI) 727936
Atlas_Id 64132
Location 3p13  [Link to chromosome band 3p13]
Location_base_pair Starts at 72888046 and ends at 72976915 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1orf198 (1q42.2) / GXYLT2 (3p13)GXYLT2 (3p13) / VAV1 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GXYLT2   33383
Cards
Entrez_Gene (NCBI)GXYLT2    glucoside xylosyltransferase 2
AliasesGLT8D4
GeneCards (Weizmann)GXYLT2
Ensembl hg19 (Hinxton)ENSG00000172986 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172986 [Gene_View]  ENSG00000172986 [Sequence]  chr3:72888046-72976915 [Contig_View]  GXYLT2 [Vega]
ICGC DataPortalENSG00000172986
TCGA cBioPortalGXYLT2
AceView (NCBI)GXYLT2
Genatlas (Paris)GXYLT2
SOURCE (Princeton)GXYLT2
Genetics Home Reference (NIH)GXYLT2
Genomic and cartography
GoldenPath hg38 (UCSC)GXYLT2  -     chr3:72888046-72976915 +  3p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GXYLT2  -     3p13   [Description]    (hg19-Feb_2009)
GoldenPathGXYLT2 - 3p13 [CytoView hg19]  GXYLT2 - 3p13 [CytoView hg38]
ImmunoBaseENSG00000172986
Genome Data Viewer NCBIGXYLT2 [Mapview hg19]  
OMIM613322   
Gene and transcription
Genbank (Entrez)BC127733
RefSeq transcript (Entrez)NM_001080393
Consensus coding sequences : CCDS (NCBI)GXYLT2
Gene ExpressionGXYLT2 [ NCBI-GEO ]   GXYLT2 [ EBI - ARRAY_EXPRESS ]   GXYLT2 [ SEEK ]   GXYLT2 [ MEM ]
Gene Expression Viewer (FireBrowse)GXYLT2 [ Firebrowse - Broad ]
GenevisibleExpression of GXYLT2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)727936
GTEX Portal (Tissue expression)GXYLT2
Human Protein AtlasENSG00000172986-GXYLT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PJZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PJZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PJZ3
PhosPhoSitePlusA0PJZ3
Domains : Interpro (EBI)Glyco_trans_8    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_8 (PF01501)   
Domain families : Pfam (NCBI)pfam01501   
Conserved Domain (NCBI)GXYLT2
SuperfamilyA0PJZ3
AlphaFold pdb e-kbA0PJZ3   
Human Protein Atlas [tissue]ENSG00000172986-GXYLT2 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A0PJZ3
IntAct (EBI)A0PJZ3
BioGRIDGXYLT2
STRING (EMBL)GXYLT2
ZODIACGXYLT2
Ontologies - Pathways
QuickGOA0PJZ3
Ontology : AmiGOintegral component of membrane  O-glycan processing  O-glycan processing  UDP-xylosyltransferase activity  UDP-xylosyltransferase activity  UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase activity  
Ontology : EGO-EBIintegral component of membrane  O-glycan processing  O-glycan processing  UDP-xylosyltransferase activity  UDP-xylosyltransferase activity  UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase activity  
NDEx NetworkGXYLT2
Atlas of Cancer Signalling NetworkGXYLT2
Wikipedia pathwaysGXYLT2
Orthology - Evolution
OrthoDB727936
GeneTree (enSembl)ENSG00000172986
Phylogenetic Trees/Animal Genes : TreeFamGXYLT2
Homologs : HomoloGeneGXYLT2
Homology/Alignments : Family Browser (UCSC)GXYLT2
Gene fusions - Rearrangements
Fusion : QuiverGXYLT2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGXYLT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GXYLT2
dbVarGXYLT2
ClinVarGXYLT2
MonarchGXYLT2
1000_GenomesGXYLT2 
Exome Variant ServerGXYLT2
GNOMAD BrowserENSG00000172986
Varsome BrowserGXYLT2
ACMGGXYLT2 variants
VarityA0PJZ3
Genomic Variants (DGV)GXYLT2 [DGVbeta]
DECIPHERGXYLT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGXYLT2 
Mutations
ICGC Data PortalGXYLT2 
TCGA Data PortalGXYLT2 
Broad Tumor PortalGXYLT2
OASIS PortalGXYLT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGXYLT2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGXYLT2
Mutations and Diseases : HGMDGXYLT2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGXYLT2
DgiDB (Drug Gene Interaction Database)GXYLT2
DoCM (Curated mutations)GXYLT2
CIViC (Clinical Interpretations of Variants in Cancer)GXYLT2
Cancer3DGXYLT2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613322   
Orphanet
DisGeNETGXYLT2
MedgenGXYLT2
Genetic Testing Registry GXYLT2
NextProtA0PJZ3 [Medical]
GENETestsGXYLT2
Target ValidationGXYLT2
Huge Navigator GXYLT2 [HugePedia]
ClinGenGXYLT2
Clinical trials, drugs, therapy
MyCancerGenomeGXYLT2
Protein Interactions : CTDGXYLT2
Pharm GKB GenePA165697418
PharosA0PJZ3
Clinical trialGXYLT2
Miscellaneous
canSAR (ICR)GXYLT2
HarmonizomeGXYLT2
DataMed IndexGXYLT2
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGXYLT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:52:25 CEST 2021

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