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GXYLT2 (glucoside xylosyltransferase 2)

Identity

Alias_namesGLT8D4
glycosyltransferase 8 domain containing 4
Other alias
HGNC (Hugo) GXYLT2
LocusID (NCBI) 727936
Atlas_Id 64132
Location 3p13  [Link to chromosome band 3p13]
Location_base_pair Starts at 72888234 and ends at 72975371 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1orf198 (1q42.2) / GXYLT2 (3p13)GXYLT2 (3p13) / VAV1 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GXYLT2   33383
Cards
Entrez_Gene (NCBI)GXYLT2  727936  glucoside xylosyltransferase 2
AliasesGLT8D4
GeneCards (Weizmann)GXYLT2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:72888234-72975371 [Contig_View]  GXYLT2 [Vega]
TCGA cBioPortalGXYLT2
AceView (NCBI)GXYLT2
Genatlas (Paris)GXYLT2
WikiGenes727936
SOURCE (Princeton)GXYLT2
Genetics Home Reference (NIH)GXYLT2
Genomic and cartography
GoldenPath hg38 (UCSC)GXYLT2  -     chr3:72888234-72975371 +  3p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GXYLT2  -     3p13   [Description]    (hg19-Feb_2009)
EnsemblGXYLT2 - 3p13 [CytoView hg19]  GXYLT2 - 3p13 [CytoView hg38]
Mapping of homologs : NCBIGXYLT2 [Mapview hg19]  GXYLT2 [Mapview hg38]
OMIM613322   
Gene and transcription
Genbank (Entrez)BC127733
RefSeq transcript (Entrez)NM_001080393
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GXYLT2
Cluster EST : UnigeneHs.710275 [ NCBI ]
CGAP (NCI)Hs.710275
Gene ExpressionGXYLT2 [ NCBI-GEO ]   GXYLT2 [ EBI - ARRAY_EXPRESS ]   GXYLT2 [ SEEK ]   GXYLT2 [ MEM ]
Gene Expression Viewer (FireBrowse)GXYLT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)727936
GTEX Portal (Tissue expression)GXYLT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PJZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PJZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PJZ3
Splice isoforms : SwissVarA0PJZ3
Catalytic activity : Enzyme2.4.2.n2 [ Enzyme-Expasy ]   2.4.2.n22.4.2.n2 [ IntEnz-EBI ]   2.4.2.n2 [ BRENDA ]   2.4.2.n2 [ KEGG ]   
PhosPhoSitePlusA0PJZ3
Domains : Interpro (EBI)Glyco_trans_8    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_8 (PF01501)   
Domain families : Pfam (NCBI)pfam01501   
Conserved Domain (NCBI)GXYLT2
DMDM Disease mutations727936
Blocks (Seattle)GXYLT2
SuperfamilyA0PJZ3
Peptide AtlasA0PJZ3
IPIIPI00374227   IPI00946370   IPI00977502   
Protein Interaction databases
DIP (DOE-UCLA)A0PJZ3
IntAct (EBI)A0PJZ3
BioGRIDGXYLT2
STRING (EMBL)GXYLT2
ZODIACGXYLT2
Ontologies - Pathways
QuickGOA0PJZ3
Ontology : AmiGOintegral component of membrane  O-glycan processing  UDP-xylosyltransferase activity  
Ontology : EGO-EBIintegral component of membrane  O-glycan processing  UDP-xylosyltransferase activity  
Pathways : KEGGOther types of O-glycan biosynthesis   
NDEx NetworkGXYLT2
Atlas of Cancer Signalling NetworkGXYLT2
Wikipedia pathwaysGXYLT2
Orthology - Evolution
OrthoDB727936
Phylogenetic Trees/Animal Genes : TreeFamGXYLT2
HOVERGENA0PJZ3
HOGENOMA0PJZ3
Homologs : HomoloGeneGXYLT2
Homology/Alignments : Family Browser (UCSC)GXYLT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGXYLT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GXYLT2
dbVarGXYLT2
ClinVarGXYLT2
1000_GenomesGXYLT2 
Exome Variant ServerGXYLT2
ExAC (Exome Aggregation Consortium)GXYLT2 (select the gene name)
Genetic variants : HAPMAP727936
Genomic Variants (DGV)GXYLT2 [DGVbeta]
DECIPHERGXYLT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGXYLT2 
Mutations
ICGC Data PortalGXYLT2 
TCGA Data PortalGXYLT2 
Broad Tumor PortalGXYLT2
OASIS PortalGXYLT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGXYLT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGXYLT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GXYLT2
DgiDB (Drug Gene Interaction Database)GXYLT2
DoCM (Curated mutations)GXYLT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GXYLT2 (select a term)
intoGenGXYLT2
Cancer3DGXYLT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613322   
Orphanet
MedgenGXYLT2
Genetic Testing Registry GXYLT2
NextProtA0PJZ3 [Medical]
TSGene727936
GENETestsGXYLT2
Target ValidationGXYLT2
Huge Navigator GXYLT2 [HugePedia]
snp3D : Map Gene to Disease727936
BioCentury BCIQGXYLT2
ClinGenGXYLT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD727936
Chemical/Pharm GKB GenePA165697418
Clinical trialGXYLT2
Miscellaneous
canSAR (ICR)GXYLT2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGXYLT2
EVEXGXYLT2
GoPubMedGXYLT2
iHOPGXYLT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:51:50 CEST 2017

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