Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GYG1 (glycogenin 1)

Identity

Alias_namesGYG
glycogenin
Other aliasGSD15
HGNC (Hugo) GYG1
LocusID (NCBI) 2992
Atlas_Id 64133
Location 3q24  [Link to chromosome band 3q24]
Location_base_pair Starts at 148709195 and ends at 148745456 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BIRC6 (2p22.3) / GYG1 (3q24)GYG1 (3q24) / GYG1 (3q24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GYG1   4699
Cards
Entrez_Gene (NCBI)GYG1  2992  glycogenin 1
AliasesGSD15; GYG
GeneCards (Weizmann)GYG1
Ensembl hg19 (Hinxton)ENSG00000163754 [Gene_View]  chr3:148709195-148745456 [Contig_View]  GYG1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163754 [Gene_View]  chr3:148709195-148745456 [Contig_View]  GYG1 [Vega]
ICGC DataPortalENSG00000163754
TCGA cBioPortalGYG1
AceView (NCBI)GYG1
Genatlas (Paris)GYG1
WikiGenes2992
SOURCE (Princeton)GYG1
Genetics Home Reference (NIH)GYG1
Genomic and cartography
GoldenPath hg19 (UCSC)GYG1  -     chr3:148709195-148745456 +  3q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GYG1  -     3q24   [Description]    (hg38-Dec_2013)
EnsemblGYG1 - 3q24 [CytoView hg19]  GYG1 - 3q24 [CytoView hg38]
Mapping of homologs : NCBIGYG1 [Mapview hg19]  GYG1 [Mapview hg38]
OMIM603942   613507   616199   
Gene and transcription
Genbank (Entrez)AA191440 AF087942 AK299962 AK312283 BC000033
RefSeq transcript (Entrez)NM_001184720 NM_001184721 NM_004130
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_027677 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)GYG1
Cluster EST : UnigeneHs.477892 [ NCBI ]
CGAP (NCI)Hs.477892
Alternative Splicing GalleryENSG00000163754
Gene ExpressionGYG1 [ NCBI-GEO ]   GYG1 [ EBI - ARRAY_EXPRESS ]   GYG1 [ SEEK ]   GYG1 [ MEM ]
Gene Expression Viewer (FireBrowse)GYG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2992
GTEX Portal (Tissue expression)GYG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46976   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP46976  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP46976
Splice isoforms : SwissVarP46976
PhosPhoSitePlusP46976
Domains : Interpro (EBI)Glyco_trans_8    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_8 (PF01501)   
Domain families : Pfam (NCBI)pfam01501   
Conserved Domain (NCBI)GYG1
DMDM Disease mutations2992
Blocks (Seattle)GYG1
PDB (SRS)3Q4S    3QVB    3RMV    3RMW    3T7M    3T7N    3T7O    3U2T    3U2U    3U2V    3U2W    3U2X   
PDB (PDBSum)3Q4S    3QVB    3RMV    3RMW    3T7M    3T7N    3T7O    3U2T    3U2U    3U2V    3U2W    3U2X   
PDB (IMB)3Q4S    3QVB    3RMV    3RMW    3T7M    3T7N    3T7O    3U2T    3U2U    3U2V    3U2W    3U2X   
PDB (RSDB)3Q4S    3QVB    3RMV    3RMW    3T7M    3T7N    3T7O    3U2T    3U2U    3U2V    3U2W    3U2X   
Structural Biology KnowledgeBase3Q4S    3QVB    3RMV    3RMW    3T7M    3T7N    3T7O    3U2T    3U2U    3U2V    3U2W    3U2X   
SCOP (Structural Classification of Proteins)3Q4S    3QVB    3RMV    3RMW    3T7M    3T7N    3T7O    3U2T    3U2U    3U2V    3U2W    3U2X   
CATH (Classification of proteins structures)3Q4S    3QVB    3RMV    3RMW    3T7M    3T7N    3T7O    3U2T    3U2U    3U2V    3U2W    3U2X   
SuperfamilyP46976
Human Protein AtlasENSG00000163754
Peptide AtlasP46976
HPRD06805
IPIIPI00180386   IPI00556308   IPI00794444   IPI00793819   IPI00981728   IPI00216115   IPI00944995   IPI00946218   
Protein Interaction databases
DIP (DOE-UCLA)P46976
IntAct (EBI)P46976
FunCoupENSG00000163754
BioGRIDGYG1
STRING (EMBL)GYG1
ZODIACGYG1
Ontologies - Pathways
QuickGOP46976
Ontology : AmiGOprotein binding  glucose binding  cytosol  carbohydrate metabolic process  glycogen biosynthetic process  glycogen biosynthetic process  glycogen catabolic process  glucose metabolic process  glycogenin glucosyltransferase activity  membrane  lysosomal lumen  small molecule metabolic process  metal ion binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  glucose binding  cytosol  carbohydrate metabolic process  glycogen biosynthetic process  glycogen biosynthetic process  glycogen catabolic process  glucose metabolic process  glycogenin glucosyltransferase activity  membrane  lysosomal lumen  small molecule metabolic process  metal ion binding  extracellular exosome  
NDEx NetworkGYG1
Atlas of Cancer Signalling NetworkGYG1
Wikipedia pathwaysGYG1
Orthology - Evolution
OrthoDB2992
GeneTree (enSembl)ENSG00000163754
Phylogenetic Trees/Animal Genes : TreeFamGYG1
HOVERGENP46976
HOGENOMP46976
Homologs : HomoloGeneGYG1
Homology/Alignments : Family Browser (UCSC)GYG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGYG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GYG1
dbVarGYG1
ClinVarGYG1
1000_GenomesGYG1 
Exome Variant ServerGYG1
ExAC (Exome Aggregation Consortium)GYG1 (select the gene name)
Genetic variants : HAPMAP2992
Genomic Variants (DGV)GYG1 [DGVbeta]
DECIPHER (Syndromes)3:148709195-148745456  ENSG00000163754
CONAN: Copy Number AnalysisGYG1 
Mutations
ICGC Data PortalGYG1 
TCGA Data PortalGYG1 
Broad Tumor PortalGYG1
OASIS PortalGYG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGYG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGYG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GYG1
DgiDB (Drug Gene Interaction Database)GYG1
DoCM (Curated mutations)GYG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GYG1 (select a term)
intoGenGYG1
Cancer3DGYG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603942    613507    616199   
Orphanet20039    23680   
MedgenGYG1
Genetic Testing Registry GYG1
NextProtP46976 [Medical]
TSGene2992
GENETestsGYG1
Huge Navigator GYG1 [HugePedia]
snp3D : Map Gene to Disease2992
BioCentury BCIQGYG1
ClinGenGYG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2992
Chemical/Pharm GKB GenePA29077
Clinical trialGYG1
Miscellaneous
canSAR (ICR)GYG1 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGYG1
EVEXGYG1
GoPubMedGYG1
iHOPGYG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:17 CET 2017

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