Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GYG2 (glycogenin 2)

Identity

Alias_symbol (synonym)GN-2
Other aliasGN2
HGNC (Hugo) GYG2
LocusID (NCBI) 8908
Atlas_Id 64134
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 2828822 and ends at 2882820 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EMB (5q11.1) / GYG2 (Xp22.33)GYG2 (Xp22.33) / GYG2 (Xp22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GYG2   4700
Cards
Entrez_Gene (NCBI)GYG2  8908  glycogenin 2
AliasesGN-2; GN2
GeneCards (Weizmann)GYG2
Ensembl hg19 (Hinxton)ENSG00000056998 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000056998 [Gene_View]  chrX:2828822-2882820 [Contig_View]  GYG2 [Vega]
ICGC DataPortalENSG00000056998
TCGA cBioPortalGYG2
AceView (NCBI)GYG2
Genatlas (Paris)GYG2
WikiGenes8908
SOURCE (Princeton)GYG2
Genetics Home Reference (NIH)GYG2
Genomic and cartography
GoldenPath hg38 (UCSC)GYG2  -     chrX:2828822-2882820 +  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GYG2  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblGYG2 - Xp22.33 [CytoView hg19]  GYG2 - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBIGYG2 [Mapview hg19]  GYG2 [Mapview hg38]
OMIM300198   
Gene and transcription
Genbank (Entrez)AK098046 AK292496 BC023152 CB410312 DQ424901
RefSeq transcript (Entrez)NM_001079855 NM_001184702 NM_001184703 NM_001184704 NM_003918
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GYG2
Cluster EST : UnigeneHs.701629 [ NCBI ]
CGAP (NCI)Hs.701629
Alternative Splicing GalleryENSG00000056998
Gene ExpressionGYG2 [ NCBI-GEO ]   GYG2 [ EBI - ARRAY_EXPRESS ]   GYG2 [ SEEK ]   GYG2 [ MEM ]
Gene Expression Viewer (FireBrowse)GYG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8908
GTEX Portal (Tissue expression)GYG2
Human Protein AtlasENSG00000056998-GYG2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15488   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15488  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15488
Splice isoforms : SwissVarO15488
PhosPhoSitePlusO15488
Domains : Interpro (EBI)Glyco_trans_8    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_8 (PF01501)   
Domain families : Pfam (NCBI)pfam01501   
Conserved Domain (NCBI)GYG2
DMDM Disease mutations8908
Blocks (Seattle)GYG2
PDB (SRS)4UEG   
PDB (PDBSum)4UEG   
PDB (IMB)4UEG   
PDB (RSDB)4UEG   
Structural Biology KnowledgeBase4UEG   
SCOP (Structural Classification of Proteins)4UEG   
CATH (Classification of proteins structures)4UEG   
SuperfamilyO15488
Human Protein Atlas [tissue]ENSG00000056998-GYG2 [tissue]
Peptide AtlasO15488
HPRD02185
IPIIPI00006742   IPI00292838   IPI00218983   IPI00218984   IPI00218985   IPI00218986   IPI00984703   IPI00973370   IPI00974542   
Protein Interaction databases
DIP (DOE-UCLA)O15488
IntAct (EBI)O15488
FunCoupENSG00000056998
BioGRIDGYG2
STRING (EMBL)GYG2
ZODIACGYG2
Ontologies - Pathways
QuickGOO15488
Ontology : AmiGOcytosol  glycogen biosynthetic process  glycogen biosynthetic process  glycogen catabolic process  glycogenin glucosyltransferase activity  lysosomal lumen  
Ontology : EGO-EBIcytosol  glycogen biosynthetic process  glycogen biosynthetic process  glycogen catabolic process  glycogenin glucosyltransferase activity  lysosomal lumen  
NDEx NetworkGYG2
Atlas of Cancer Signalling NetworkGYG2
Wikipedia pathwaysGYG2
Orthology - Evolution
OrthoDB8908
GeneTree (enSembl)ENSG00000056998
Phylogenetic Trees/Animal Genes : TreeFamGYG2
HOVERGENO15488
HOGENOMO15488
Homologs : HomoloGeneGYG2
Homology/Alignments : Family Browser (UCSC)GYG2
Gene fusions - Rearrangements
Tumor Fusion PortalGYG2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGYG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GYG2
dbVarGYG2
ClinVarGYG2
1000_GenomesGYG2 
Exome Variant ServerGYG2
ExAC (Exome Aggregation Consortium)ENSG00000056998
GNOMAD BrowserENSG00000056998
Genetic variants : HAPMAP8908
Genomic Variants (DGV)GYG2 [DGVbeta]
DECIPHERGYG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGYG2 
Mutations
ICGC Data PortalGYG2 
TCGA Data PortalGYG2 
Broad Tumor PortalGYG2
OASIS PortalGYG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGYG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGYG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch GYG2
DgiDB (Drug Gene Interaction Database)GYG2
DoCM (Curated mutations)GYG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GYG2 (select a term)
intoGenGYG2
Cancer3DGYG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300198   
Orphanet
DisGeNETGYG2
MedgenGYG2
Genetic Testing Registry GYG2
NextProtO15488 [Medical]
TSGene8908
GENETestsGYG2
Target ValidationGYG2
Huge Navigator GYG2 [HugePedia]
snp3D : Map Gene to Disease8908
BioCentury BCIQGYG2
ClinGenGYG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8908
Chemical/Pharm GKB GenePA29078
Clinical trialGYG2
Miscellaneous
canSAR (ICR)GYG2 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGYG2
EVEXGYG2
GoPubMedGYG2
iHOPGYG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:32:21 CET 2017

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