Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GYPA (glycophorin A (MNS blood group))

Identity

Alias_namesMNS
glycophorin A (includes MN blood group)
glycophorin A (MN blood group)
Alias_symbol (synonym)GPA
MN
CD235a
Other aliasGPErik
GPSAT
HGpMiV
HGpMiXI
HGpSta(C)
PAS-2
HGNC (Hugo) GYPA
LocusID (NCBI) 2993
Atlas_Id 52159
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 144109303 and ends at 144140786 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GYPA   4702
LRG (Locus Reference Genomic)LRG_793
Cards
Entrez_Gene (NCBI)GYPA  2993  glycophorin A (MNS blood group)
AliasesCD235a; GPA; GPErik; GPSAT; 
HGpMiV; HGpMiXI; HGpSta(C); MN; MNS; PAS-2
GeneCards (Weizmann)GYPA
Ensembl hg19 (Hinxton)ENSG00000170180 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170180 [Gene_View]  chr4:144109303-144140786 [Contig_View]  GYPA [Vega]
ICGC DataPortalENSG00000170180
TCGA cBioPortalGYPA
AceView (NCBI)GYPA
Genatlas (Paris)GYPA
WikiGenes2993
SOURCE (Princeton)GYPA
Genetics Home Reference (NIH)GYPA
Genomic and cartography
GoldenPath hg38 (UCSC)GYPA  -     chr4:144109303-144140786 -  4q31.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GYPA  -     4q31.21   [Description]    (hg19-Feb_2009)
EnsemblGYPA - 4q31.21 [CytoView hg19]  GYPA - 4q31.21 [CytoView hg38]
Mapping of homologs : NCBIGYPA [Mapview hg19]  GYPA [Mapview hg38]
OMIM111300   611162   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001308187 NM_001308190 NM_002099
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GYPA
Cluster EST : UnigeneHs.434973 [ NCBI ]
CGAP (NCI)Hs.434973
Alternative Splicing GalleryENSG00000170180
Gene ExpressionGYPA [ NCBI-GEO ]   GYPA [ EBI - ARRAY_EXPRESS ]   GYPA [ SEEK ]   GYPA [ MEM ]
Gene Expression Viewer (FireBrowse)GYPA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2993
GTEX Portal (Tissue expression)GYPA
Protein : pattern, domain, 3D structure
UniProt/SwissProtP02724   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP02724  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP02724
Splice isoforms : SwissVarP02724
PhosPhoSitePlusP02724
Domaine pattern : Prosite (Expaxy)GLYCOPHORIN_A (PS00312)   
Domains : Interpro (EBI)Glycophorin    Glycophorin_CS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GYPA
DMDM Disease mutations2993
Blocks (Seattle)GYPA
PDB (SRS)1AFO    1MSR    2KPE    2KPF    5EH4    5EH6   
PDB (PDBSum)1AFO    1MSR    2KPE    2KPF    5EH4    5EH6   
PDB (IMB)1AFO    1MSR    2KPE    2KPF    5EH4    5EH6   
PDB (RSDB)1AFO    1MSR    2KPE    2KPF    5EH4    5EH6   
Structural Biology KnowledgeBase1AFO    1MSR    2KPE    2KPF    5EH4    5EH6   
SCOP (Structural Classification of Proteins)1AFO    1MSR    2KPE    2KPF    5EH4    5EH6   
CATH (Classification of proteins structures)1AFO    1MSR    2KPE    2KPF    5EH4    5EH6   
SuperfamilyP02724
Human Protein AtlasENSG00000170180
Peptide AtlasP02724
HPRD07508
IPIIPI00298800   IPI00969374   IPI00956171   IPI00930728   IPI01021930   IPI01025190   IPI00943812   IPI00942237   IPI00965524   IPI00384414   IPI00956077   IPI00955760   IPI01015890   
Protein Interaction databases
DIP (DOE-UCLA)P02724
IntAct (EBI)P02724
FunCoupENSG00000170180
BioGRIDGYPA
STRING (EMBL)GYPA
ZODIACGYPA
Ontologies - Pathways
QuickGOP02724
Ontology : AmiGOvirus receptor activity  plasma membrane  membrane  integral component of membrane  identical protein binding  viral entry into host cell  leukocyte migration  extracellular exosome  
Ontology : EGO-EBIvirus receptor activity  plasma membrane  membrane  integral component of membrane  identical protein binding  viral entry into host cell  leukocyte migration  extracellular exosome  
Pathways : KEGGHematopoietic cell lineage    Malaria   
NDEx NetworkGYPA
Atlas of Cancer Signalling NetworkGYPA
Wikipedia pathwaysGYPA
Orthology - Evolution
OrthoDB2993
GeneTree (enSembl)ENSG00000170180
Phylogenetic Trees/Animal Genes : TreeFamGYPA
HOVERGENP02724
HOGENOMP02724
Homologs : HomoloGeneGYPA
Homology/Alignments : Family Browser (UCSC)GYPA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGYPA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GYPA
dbVarGYPA
ClinVarGYPA
1000_GenomesGYPA 
Exome Variant ServerGYPA
ExAC (Exome Aggregation Consortium)GYPA (select the gene name)
Genetic variants : HAPMAP2993
Genomic Variants (DGV)GYPA [DGVbeta]
DECIPHERGYPA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGYPA 
Mutations
ICGC Data PortalGYPA 
TCGA Data PortalGYPA 
Broad Tumor PortalGYPA
OASIS PortalGYPA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGYPA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGYPA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GYPA
DgiDB (Drug Gene Interaction Database)GYPA
DoCM (Curated mutations)GYPA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GYPA (select a term)
intoGenGYPA
Cancer3DGYPA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM111300    611162   
Orphanet
MedgenGYPA
Genetic Testing Registry GYPA
NextProtP02724 [Medical]
TSGene2993
GENETestsGYPA
Target ValidationGYPA
Huge Navigator GYPA [HugePedia]
snp3D : Map Gene to Disease2993
BioCentury BCIQGYPA
ClinGenGYPA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2993
Chemical/Pharm GKB GenePA29080
Clinical trialGYPA
Miscellaneous
canSAR (ICR)GYPA (select the gene name)
Probes
Litterature
PubMed93 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGYPA
EVEXGYPA
GoPubMedGYPA
iHOPGYPA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:10:55 CEST 2017

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