Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GYPB (glycophorin B (MNS blood group))

Identity

Alias_namesMNS
glycophorin B (includes Ss blood group)
glycophorin B (Ss blood group)
Alias_symbol (synonym)GPB
SS
CD235b
Other aliasGYP
PAS-3
HGNC (Hugo) GYPB
LocusID (NCBI) 2994
Atlas_Id 64136
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 143996104 and ends at 144019345 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GYPB   4703
LRG (Locus Reference Genomic)LRG_794
Cards
Entrez_Gene (NCBI)GYPB  2994  glycophorin B (MNS blood group)
AliasesCD235b; GPB; GYP; MNS; 
PAS-3; SS
GeneCards (Weizmann)GYPB
Ensembl hg19 (Hinxton)ENSG00000250361 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250361 [Gene_View]  chr4:143996104-144019345 [Contig_View]  GYPB [Vega]
ICGC DataPortalENSG00000250361
TCGA cBioPortalGYPB
AceView (NCBI)GYPB
Genatlas (Paris)GYPB
WikiGenes2994
SOURCE (Princeton)GYPB
Genetics Home Reference (NIH)GYPB
Genomic and cartography
GoldenPath hg38 (UCSC)GYPB  -     chr4:143996104-144019345 -  4q31.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GYPB  -     4q31.21   [Description]    (hg19-Feb_2009)
EnsemblGYPB - 4q31.21 [CytoView hg19]  GYPB - 4q31.21 [CytoView hg38]
Mapping of homologs : NCBIGYPB [Mapview hg19]  GYPB [Mapview hg38]
OMIM111740   611162   
Gene and transcription
Genbank (Entrez)AY509882 AY509883 AY950609 AY950610 AY950611
RefSeq transcript (Entrez)NM_001304382 NM_002100
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GYPB
Cluster EST : UnigeneHs.654368 [ NCBI ]
CGAP (NCI)Hs.654368
Alternative Splicing GalleryENSG00000250361
Gene ExpressionGYPB [ NCBI-GEO ]   GYPB [ EBI - ARRAY_EXPRESS ]   GYPB [ SEEK ]   GYPB [ MEM ]
Gene Expression Viewer (FireBrowse)GYPB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2994
GTEX Portal (Tissue expression)GYPB
Human Protein AtlasENSG00000250361-GYPB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP06028   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP06028  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP06028
Splice isoforms : SwissVarP06028
PhosPhoSitePlusP06028
Domaine pattern : Prosite (Expaxy)GLYCOPHORIN_A (PS00312)   
Domains : Interpro (EBI)Glycophorin    Glycophorin_CS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GYPB
DMDM Disease mutations2994
Blocks (Seattle)GYPB
SuperfamilyP06028
Human Protein Atlas [tissue]ENSG00000250361-GYPB [tissue]
Peptide AtlasP06028
HPRD00201
IPIIPI00024995   IPI00922073   IPI00937946   IPI00936114   IPI00935685   IPI01018833   IPI00815706   IPI01017879   IPI00966044   IPI00967287   IPI00964096   IPI00941493   
Protein Interaction databases
DIP (DOE-UCLA)P06028
IntAct (EBI)P06028
FunCoupENSG00000250361
BioGRIDGYPB
STRING (EMBL)GYPB
ZODIACGYPB
Ontologies - Pathways
QuickGOP06028
Ontology : AmiGOprotein binding  plasma membrane  integral component of plasma membrane  leukocyte migration  
Ontology : EGO-EBIprotein binding  plasma membrane  integral component of plasma membrane  leukocyte migration  
Pathways : KEGGMalaria   
NDEx NetworkGYPB
Atlas of Cancer Signalling NetworkGYPB
Wikipedia pathwaysGYPB
Orthology - Evolution
OrthoDB2994
GeneTree (enSembl)ENSG00000250361
Phylogenetic Trees/Animal Genes : TreeFamGYPB
HOVERGENP06028
HOGENOMP06028
Homologs : HomoloGeneGYPB
Homology/Alignments : Family Browser (UCSC)GYPB
Gene fusions - Rearrangements
Tumor Fusion PortalGYPB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGYPB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GYPB
dbVarGYPB
ClinVarGYPB
1000_GenomesGYPB 
Exome Variant ServerGYPB
ExAC (Exome Aggregation Consortium)ENSG00000250361
GNOMAD BrowserENSG00000250361
Genetic variants : HAPMAP2994
Genomic Variants (DGV)GYPB [DGVbeta]
DECIPHERGYPB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGYPB 
Mutations
ICGC Data PortalGYPB 
TCGA Data PortalGYPB 
Broad Tumor PortalGYPB
OASIS PortalGYPB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGYPB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGYPB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GYPB
DgiDB (Drug Gene Interaction Database)GYPB
DoCM (Curated mutations)GYPB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GYPB (select a term)
intoGenGYPB
Cancer3DGYPB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM111740    611162   
Orphanet
DisGeNETGYPB
MedgenGYPB
Genetic Testing Registry GYPB
NextProtP06028 [Medical]
TSGene2994
GENETestsGYPB
Target ValidationGYPB
Huge Navigator GYPB [HugePedia]
snp3D : Map Gene to Disease2994
BioCentury BCIQGYPB
ClinGenGYPB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2994
Chemical/Pharm GKB GenePA29081
Clinical trialGYPB
Miscellaneous
canSAR (ICR)GYPB (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGYPB
EVEXGYPB
GoPubMedGYPB
iHOPGYPB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:09:58 CET 2017

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