Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GYPC (glycophorin C (Gerbich blood group))

Identity

Alias_symbol (synonym)GPC
GYPD
Ge
CD236
CD236R
Other aliasGE
GE:GPC:GPD:GYPD
GPD
PAS-2
PAS-2'
HGNC (Hugo) GYPC
LocusID (NCBI) 2995
Atlas_Id 64137
Location 2q14.3  [Link to chromosome band 2q14]
Location_base_pair Starts at 126655935 and ends at 126696675 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GYPC (2q14.3) / GYPC (2q14.3)MAN1A2 (1p12) / GYPC (2q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GYPC   4704
LRG (Locus Reference Genomic)LRG_813
Cards
Entrez_Gene (NCBI)GYPC  2995  glycophorin C (Gerbich blood group)
AliasesCD236; CD236R; GE; GE:GPC:GPD:GYPD; 
GPC; GPD; GYPD; PAS-2; PAS-2'
GeneCards (Weizmann)GYPC
Ensembl hg19 (Hinxton)ENSG00000136732 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136732 [Gene_View]  chr2:126655935-126696675 [Contig_View]  GYPC [Vega]
ICGC DataPortalENSG00000136732
TCGA cBioPortalGYPC
AceView (NCBI)GYPC
Genatlas (Paris)GYPC
WikiGenes2995
SOURCE (Princeton)GYPC
Genetics Home Reference (NIH)GYPC
Genomic and cartography
GoldenPath hg38 (UCSC)GYPC  -     chr2:126655935-126696675 +  2q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GYPC  -     2q14.3   [Description]    (hg19-Feb_2009)
EnsemblGYPC - 2q14.3 [CytoView hg19]  GYPC - 2q14.3 [CytoView hg38]
Mapping of homologs : NCBIGYPC [Mapview hg19]  GYPC [Mapview hg38]
OMIM110750   611162   616089   
Gene and transcription
Genbank (Entrez)AA913940 AK312032 BC016653 BC104246 BC104247
RefSeq transcript (Entrez)NM_001256584 NM_002101 NM_016815
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GYPC
Cluster EST : UnigeneHs.59138 [ NCBI ]
CGAP (NCI)Hs.59138
Alternative Splicing GalleryENSG00000136732
Gene ExpressionGYPC [ NCBI-GEO ]   GYPC [ EBI - ARRAY_EXPRESS ]   GYPC [ SEEK ]   GYPC [ MEM ]
Gene Expression Viewer (FireBrowse)GYPC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2995
GTEX Portal (Tissue expression)GYPC
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04921   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP04921  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04921
Splice isoforms : SwissVarP04921
PhosPhoSitePlusP04921
Domains : Interpro (EBI)Glycophorin    Neurexin-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)4.1m (SM00294)  
Conserved Domain (NCBI)GYPC
DMDM Disease mutations2995
Blocks (Seattle)GYPC
PDB (SRS)2EJY   
PDB (PDBSum)2EJY   
PDB (IMB)2EJY   
PDB (RSDB)2EJY   
Structural Biology KnowledgeBase2EJY   
SCOP (Structural Classification of Proteins)2EJY   
CATH (Classification of proteins structures)2EJY   
SuperfamilyP04921
Human Protein AtlasENSG00000136732
Peptide AtlasP04921
HPRD00193
IPIIPI00026299   IPI00218128   IPI01009124   
Protein Interaction databases
DIP (DOE-UCLA)P04921
IntAct (EBI)P04921
FunCoupENSG00000136732
BioGRIDGYPC
STRING (EMBL)GYPC
ZODIACGYPC
Ontologies - Pathways
QuickGOP04921
Ontology : AmiGOreceptor activity  receptor binding  protein binding  plasma membrane  integral component of plasma membrane  cell-cell adherens junction  homophilic cell adhesion via plasma membrane adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  cell recognition  membrane  cortical cytoskeleton  protein homodimerization activity  cell adhesion molecule binding  leukocyte migration  
Ontology : EGO-EBIreceptor activity  receptor binding  protein binding  plasma membrane  integral component of plasma membrane  cell-cell adherens junction  homophilic cell adhesion via plasma membrane adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  cell recognition  membrane  cortical cytoskeleton  protein homodimerization activity  cell adhesion molecule binding  leukocyte migration  
Pathways : KEGGMalaria   
NDEx NetworkGYPC
Atlas of Cancer Signalling NetworkGYPC
Wikipedia pathwaysGYPC
Orthology - Evolution
OrthoDB2995
GeneTree (enSembl)ENSG00000136732
Phylogenetic Trees/Animal Genes : TreeFamGYPC
HOVERGENP04921
HOGENOMP04921
Homologs : HomoloGeneGYPC
Homology/Alignments : Family Browser (UCSC)GYPC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGYPC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GYPC
dbVarGYPC
ClinVarGYPC
1000_GenomesGYPC 
Exome Variant ServerGYPC
ExAC (Exome Aggregation Consortium)GYPC (select the gene name)
Genetic variants : HAPMAP2995
Genomic Variants (DGV)GYPC [DGVbeta]
DECIPHERGYPC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGYPC 
Mutations
ICGC Data PortalGYPC 
TCGA Data PortalGYPC 
Broad Tumor PortalGYPC
OASIS PortalGYPC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGYPC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGYPC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GYPC
DgiDB (Drug Gene Interaction Database)GYPC
DoCM (Curated mutations)GYPC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GYPC (select a term)
intoGenGYPC
Cancer3DGYPC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM110750    611162    616089   
Orphanet3655   
MedgenGYPC
Genetic Testing Registry GYPC
NextProtP04921 [Medical]
TSGene2995
GENETestsGYPC
Target ValidationGYPC
Huge Navigator GYPC [HugePedia]
snp3D : Map Gene to Disease2995
BioCentury BCIQGYPC
ClinGenGYPC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2995
Chemical/Pharm GKB GenePA29082
Clinical trialGYPC
Miscellaneous
canSAR (ICR)GYPC (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGYPC
EVEXGYPC
GoPubMedGYPC
iHOPGYPC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:51:51 CEST 2017

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