Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GYPE (glycophorin E (MNS blood group))

Identity

Alias_namesglycophorin E
Alias_symbol (synonym)GPE
MNS
Other aliasMiIX
HGNC (Hugo) GYPE
LocusID (NCBI) 2996
Atlas_Id 64138
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 143875315 and ends at 143905563 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GYPE   4705
Cards
Entrez_Gene (NCBI)GYPE  2996  glycophorin E (MNS blood group)
AliasesGPE; MNS; MiIX
GeneCards (Weizmann)GYPE
Ensembl hg19 (Hinxton)ENSG00000197465 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197465 [Gene_View]  chr4:143875315-143905563 [Contig_View]  GYPE [Vega]
ICGC DataPortalENSG00000197465
TCGA cBioPortalGYPE
AceView (NCBI)GYPE
Genatlas (Paris)GYPE
WikiGenes2996
SOURCE (Princeton)GYPE
Genetics Home Reference (NIH)GYPE
Genomic and cartography
GoldenPath hg38 (UCSC)GYPE  -     chr4:143875315-143905563 -  4q31.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GYPE  -     4q31.21   [Description]    (hg19-Feb_2009)
EnsemblGYPE - 4q31.21 [CytoView hg19]  GYPE - 4q31.21 [CytoView hg38]
Mapping of homologs : NCBIGYPE [Mapview hg19]  GYPE [Mapview hg38]
OMIM138590   
Gene and transcription
Genbank (Entrez)AF085899 BC017864 BC064396 BG528203 BX091225
RefSeq transcript (Entrez)NM_002102 NM_198682
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GYPE
Cluster EST : UnigeneHs.728753 [ NCBI ]
CGAP (NCI)Hs.728753
Alternative Splicing GalleryENSG00000197465
Gene ExpressionGYPE [ NCBI-GEO ]   GYPE [ EBI - ARRAY_EXPRESS ]   GYPE [ SEEK ]   GYPE [ MEM ]
Gene Expression Viewer (FireBrowse)GYPE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2996
GTEX Portal (Tissue expression)GYPE
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15421   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP15421  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15421
Splice isoforms : SwissVarP15421
PhosPhoSitePlusP15421
Domains : Interpro (EBI)Glycophorin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GYPE
DMDM Disease mutations2996
Blocks (Seattle)GYPE
SuperfamilyP15421
Human Protein AtlasENSG00000197465
Peptide AtlasP15421
HPRD00723
IPIIPI00011617   IPI00956444   IPI00929146   IPI00956741   IPI00964385   
Protein Interaction databases
DIP (DOE-UCLA)P15421
IntAct (EBI)P15421
FunCoupENSG00000197465
BioGRIDGYPE
STRING (EMBL)GYPE
ZODIACGYPE
Ontologies - Pathways
QuickGOP15421
Ontology : AmiGOplasma membrane  integral component of plasma membrane  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  
NDEx NetworkGYPE
Atlas of Cancer Signalling NetworkGYPE
Wikipedia pathwaysGYPE
Orthology - Evolution
OrthoDB2996
GeneTree (enSembl)ENSG00000197465
Phylogenetic Trees/Animal Genes : TreeFamGYPE
HOVERGENP15421
HOGENOMP15421
Homologs : HomoloGeneGYPE
Homology/Alignments : Family Browser (UCSC)GYPE
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGYPE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GYPE
dbVarGYPE
ClinVarGYPE
1000_GenomesGYPE 
Exome Variant ServerGYPE
ExAC (Exome Aggregation Consortium)GYPE (select the gene name)
Genetic variants : HAPMAP2996
Genomic Variants (DGV)GYPE [DGVbeta]
DECIPHERGYPE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGYPE 
Mutations
ICGC Data PortalGYPE 
TCGA Data PortalGYPE 
Broad Tumor PortalGYPE
OASIS PortalGYPE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGYPE  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGYPE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GYPE
DgiDB (Drug Gene Interaction Database)GYPE
DoCM (Curated mutations)GYPE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GYPE (select a term)
intoGenGYPE
Cancer3DGYPE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM138590   
Orphanet
MedgenGYPE
Genetic Testing Registry GYPE
NextProtP15421 [Medical]
TSGene2996
GENETestsGYPE
Target ValidationGYPE
Huge Navigator GYPE [HugePedia]
snp3D : Map Gene to Disease2996
BioCentury BCIQGYPE
ClinGenGYPE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2996
Chemical/Pharm GKB GenePA29083
Clinical trialGYPE
Miscellaneous
canSAR (ICR)GYPE (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGYPE
EVEXGYPE
GoPubMedGYPE
iHOPGYPE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:51:51 CEST 2017

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