Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GZF1 (GDNF inducible zinc finger protein 1)

Identity

Alias_namesZNF336
zinc finger protein 336
Alias_symbol (synonym)dJ322G13.2
ZBTB23
Other alias
HGNC (Hugo) GZF1
LocusID (NCBI) 64412
Atlas_Id 64140
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 23362132 and ends at 23373061 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GZF1 (20p11.21) / PTRH2 (17q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GZF1   15808
Cards
Entrez_Gene (NCBI)GZF1  64412  GDNF inducible zinc finger protein 1
AliasesZBTB23; ZNF336
GeneCards (Weizmann)GZF1
Ensembl hg19 (Hinxton)ENSG00000125812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125812 [Gene_View]  chr20:23362132-23373061 [Contig_View]  GZF1 [Vega]
ICGC DataPortalENSG00000125812
TCGA cBioPortalGZF1
AceView (NCBI)GZF1
Genatlas (Paris)GZF1
WikiGenes64412
SOURCE (Princeton)GZF1
Genetics Home Reference (NIH)GZF1
Genomic and cartography
GoldenPath hg38 (UCSC)GZF1  -     chr20:23362132-23373061 +  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GZF1  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblGZF1 - 20p11.21 [CytoView hg19]  GZF1 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBIGZF1 [Mapview hg19]  GZF1 [Mapview hg38]
OMIM613842   
Gene and transcription
Genbank (Entrez)AA062926 AB100265 AK025447 AK056159 AK056477
RefSeq transcript (Entrez)NM_001317012 NM_001317019 NM_022482
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GZF1
Cluster EST : UnigeneHs.740897 [ NCBI ]
CGAP (NCI)Hs.740897
Alternative Splicing GalleryENSG00000125812
Gene ExpressionGZF1 [ NCBI-GEO ]   GZF1 [ EBI - ARRAY_EXPRESS ]   GZF1 [ SEEK ]   GZF1 [ MEM ]
Gene Expression Viewer (FireBrowse)GZF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64412
GTEX Portal (Tissue expression)GZF1
Human Protein AtlasENSG00000125812-GZF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H116   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H116  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H116
Splice isoforms : SwissVarQ9H116
PhosPhoSitePlusQ9H116
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00651    pfam13912   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)GZF1
DMDM Disease mutations64412
Blocks (Seattle)GZF1
SuperfamilyQ9H116
Human Protein Atlas [tissue]ENSG00000125812-GZF1 [tissue]
Peptide AtlasQ9H116
HPRD15778
IPIIPI00033892   IPI01009248   IPI01015826   IPI00218261   
Protein Interaction databases
DIP (DOE-UCLA)Q9H116
IntAct (EBI)Q9H116
FunCoupENSG00000125812
BioGRIDGZF1
STRING (EMBL)GZF1
ZODIACGZF1
Ontologies - Pathways
QuickGOQ9H116
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  negative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II distal enhancer sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding  transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding  branching involved in ureteric bud morphogenesis  nucleus  nucleoplasm  nucleolus  transcription, DNA-templated  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  negative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II distal enhancer sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding  transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding  branching involved in ureteric bud morphogenesis  nucleus  nucleoplasm  nucleolus  transcription, DNA-templated  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkGZF1
Atlas of Cancer Signalling NetworkGZF1
Wikipedia pathwaysGZF1
Orthology - Evolution
OrthoDB64412
GeneTree (enSembl)ENSG00000125812
Phylogenetic Trees/Animal Genes : TreeFamGZF1
HOVERGENQ9H116
HOGENOMQ9H116
Homologs : HomoloGeneGZF1
Homology/Alignments : Family Browser (UCSC)GZF1
Gene fusions - Rearrangements
Tumor Fusion PortalGZF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGZF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GZF1
dbVarGZF1
ClinVarGZF1
1000_GenomesGZF1 
Exome Variant ServerGZF1
ExAC (Exome Aggregation Consortium)ENSG00000125812
GNOMAD BrowserENSG00000125812
Genetic variants : HAPMAP64412
Genomic Variants (DGV)GZF1 [DGVbeta]
DECIPHERGZF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGZF1 
Mutations
ICGC Data PortalGZF1 
TCGA Data PortalGZF1 
Broad Tumor PortalGZF1
OASIS PortalGZF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGZF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGZF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GZF1
DgiDB (Drug Gene Interaction Database)GZF1
DoCM (Curated mutations)GZF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GZF1 (select a term)
intoGenGZF1
Cancer3DGZF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613842   
Orphanet
DisGeNETGZF1
MedgenGZF1
Genetic Testing Registry GZF1
NextProtQ9H116 [Medical]
TSGene64412
GENETestsGZF1
Target ValidationGZF1
Huge Navigator GZF1 [HugePedia]
snp3D : Map Gene to Disease64412
BioCentury BCIQGZF1
ClinGenGZF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64412
Chemical/Pharm GKB GenePA162390561
Clinical trialGZF1
Miscellaneous
canSAR (ICR)GZF1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGZF1
EVEXGZF1
GoPubMedGZF1
iHOPGZF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:33 CET 2017

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