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H19 (H19, imprinted maternally expressed transcript (non-protein coding))

Identity

Alias_namesH19
Alias_symbol (synonym)D11S813E
ASM
ASM1
NCRNA00008
LINC00008
HGNC (Hugo) H19
LocusID (NCBI) 283120
Atlas_Id 305
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 2016406 and ends at 2019105 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACTA1 (1q42.13) / H19 (11p15.5)CTNNBIP1 (1p36.22) / H19 (11p15.5)EIF2S3 (Xp22.11) / H19 (11p15.5)
FBLN1 (22q13.31) / H19 (11p15.5)GATA2 (3q21.3) / H19 (11p15.5)GNAI2 (3p21.31) / H19 (11p15.5)
H19 (11p15.5) / CALR (19p13.2)H19 (11p15.5) / COL1A1 (17q21.33)H19 (11p15.5) / CTSB (8p23.1)
H19 (11p15.5) / DDIT4 (10q22.1)H19 (11p15.5) / DMXL2 (15q21.2)H19 (11p15.5) / H19 (11p15.5)
H19 (11p15.5) / LAMA5 (20q13.33)H19 (11p15.5) / LRRC59 (17q21.33)H19 (11p15.5) / MMP13 (11q22.2)
H19 (11p15.5) / MRPL21 (11q13.3)H19 (11p15.5) / NCEH1 (3q26.31)H19 (11p15.5) / RBM15B (3p21.2)
H19 (11p15.5) / TCEA3 (1p36.12)H19 (11p15.5) / VCPIP1 (8q13.1)H19 (11p15.5) / WDR62 (19q13.12)
HAUS7 (Xq28) / H19 (11p15.5)HMGA1 (6p21.31) / H19 (11p15.5)LOC282997 () / H19 (11p15.5)
MDC1 (6p21.33) / H19 (11p15.5)MMP14 (14q11.2) / H19 (11p15.5)PNKD (2q35) / H19 (11p15.5)
PRR12 (19q13.33) / H19 (11p15.5)RAD23A (19p13.2) / H19 (11p15.5)RPL14 (3p22.1) / H19 (11p15.5)
SLC37A1 (21q22.3) / H19 (11p15.5)TXNDC5 (6p24.3) / H19 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 6 ]
  Neuro-Endocrine/Endocrine System: Adrenal cortical carcinoma
Soft Tissues: Embryonal rhabdomyosarcoma
Liver: Hepatoblastoma
Soft tissue tumors: an overview
Lung: Translocations in Adenocarcinoma
Kidney: Nephroblastoma (Wilms tumor)


Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Beckwith-Wiedemann syndrome


External links

Nomenclature
HGNC (Hugo)H19   4713
LRG (Locus Reference Genomic)LRG_1030
Cards
Entrez_Gene (NCBI)H19  283120  H19, imprinted maternally expressed transcript (non-protein coding)
AliasesASM; ASM1; BWS; D11S813E; 
LINC00008; NCRNA00008; WT2
GeneCards (Weizmann)H19
Ensembl hg19 (Hinxton)ENSG00000130600 [Gene_View]  chr11:2016406-2019105 [Contig_View]  H19 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130600 [Gene_View]  chr11:2016406-2019105 [Contig_View]  H19 [Vega]
ICGC DataPortalENSG00000130600
TCGA cBioPortalH19
AceView (NCBI)H19
Genatlas (Paris)H19
WikiGenes283120
SOURCE (Princeton)H19
Genetics Home Reference (NIH)H19
Genomic and cartography
GoldenPath hg19 (UCSC)H19  -     chr11:2016406-2019105 -  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)H19  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblH19 - 11p15.5 [CytoView hg19]  H19 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIH19 [Mapview hg19]  H19 [Mapview hg38]
OMIM103280   130650   180860   194070   194071   
Gene and transcription
Genbank (Entrez)AK056774 AK092486 AK123560 AK311497 AL546946
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_016165 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)H19
Cluster EST : UnigeneHs.533566 [ NCBI ]
CGAP (NCI)Hs.533566
Alternative Splicing GalleryENSG00000130600
Gene ExpressionH19 [ NCBI-GEO ]   H19 [ EBI - ARRAY_EXPRESS ]   H19 [ SEEK ]   H19 [ MEM ]
Gene Expression Viewer (FireBrowse)H19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)283120
GTEX Portal (Tissue expression)H19
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)H19
DMDM Disease mutations283120
Blocks (Seattle)H19
Human Protein AtlasENSG00000130600
IPIIPI00307804   IPI00001322   
Protein Interaction databases
FunCoupENSG00000130600
BioGRIDH19
STRING (EMBL)H19
ZODIACH19
Ontologies - Pathways
Huge Navigator H19 [HugePedia]
snp3D : Map Gene to Disease283120
BioCentury BCIQH19
ClinGenH19 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283120
Chemical/Pharm GKB GenePA29091
Clinical trialH19
Miscellaneous
canSAR (ICR)H19 (select the gene name)
Probes
Litterature
PubMed133 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH19
EVEXH19
GoPubMedH19
iHOPH19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Nov 18 19:39:00 CET 2016

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