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H19 (H19 imprinted maternally expressed transcript)

Identity

Alias (NCBI)ASM
ASM1
BWS
D11S813E
LINC00008
MIR675HG
NCRNA00008
WT2
HGNC (Hugo) H19
HGNC Alias symbD11S813E
ASM
ASM1
NCRNA00008
LINC00008
MIR675HG
HGNC Alias namenon-protein coding RNA 8
 long intergenic non-protein coding RNA 8
 MIR675 host gene
 adult skeletal muscle
HGNC Previous nameH19, imprinted maternally expressed untranslated mRNA
 H19, imprinted maternally expressed transcript (non-protein coding)
LocusID (NCBI) 283120
Atlas_Id 305
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 1995176 and ends at 2001466 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACTA1 (1q42.13) / H19 (11p15.5)CTNNBIP1 (1p36.22) / H19 (11p15.5)EIF2S3 (Xp22.11) / H19 (11p15.5)
FBLN1 (22q13.31) / H19 (11p15.5)GATA2 (3q21.3) / H19 (11p15.5)GNAI2 (3p21.31) / H19 (11p15.5)
H19 (11p15.5) / CALR (19p13.2)H19 (11p15.5) / COL1A1 (17q21.33)H19 (11p15.5) / CTSB (8p23.1)
H19 (11p15.5) / DDIT4 (10q22.1)H19 (11p15.5) / DMXL2 (15q21.2)H19 (11p15.5) / H19 (11p15.5)
H19 (11p15.5) / LAMA5 (20q13.33)H19 (11p15.5) / LRRC59 (17q21.33)H19 (11p15.5) / MMP13 (11q22.2)
H19 (11p15.5) / MRPL21 (11q13.3)H19 (11p15.5) / NCEH1 (3q26.31)H19 (11p15.5) / RBM15B (3p21.2)
H19 (11p15.5) / TCEA3 (1p36.12)H19 (11p15.5) / VCPIP1 (8q13.1)H19 (11p15.5) / WDR62 (19q13.12)
HAUS7 (Xq28) / H19 (11p15.5)HMGA1 (6p21.31) / H19 (11p15.5)LOC282997 () / H19 (11p15.5)
MDC1 (6p21.33) / H19 (11p15.5)MMP14 (14q11.2) / H19 (11p15.5)PNKD (2q35) / H19 (11p15.5)
PRR12 (19q13.33) / H19 (11p15.5)RAD23A (19p13.2) / H19 (11p15.5)RPL14 (3p22.1) / H19 (11p15.5)
SLC37A1 (21q22.3) / H19 (11p15.5)TXNDC5 (6p24.3) / H19 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Beckwith-Wiedemann syndrome


External links

Nomenclature
HGNC (Hugo)H19   4713
LRG (Locus Reference Genomic)LRG_1030
Cards
Entrez_Gene (NCBI)H19    H19 imprinted maternally expressed transcript
AliasesASM; ASM1; BWS; D11S813E; 
LINC00008; MIR675HG; NCRNA00008; WT2
GeneCards (Weizmann)H19
Ensembl hg19 (Hinxton)ENSG00000130600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130600 [Gene_View]  ENSG00000130600 [Sequence]  chr11:1995176-2001466 [Contig_View]  H19 [Vega]
ICGC DataPortalENSG00000130600
TCGA cBioPortalH19
AceView (NCBI)H19
Genatlas (Paris)H19
SOURCE (Princeton)H19
Genetics Home Reference (NIH)H19
Genomic and cartography
GoldenPath hg38 (UCSC)H19  -     chr11:1995176-2001466 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H19  -     11p15.5   [Description]    (hg19-Feb_2009)
GoldenPathH19 - 11p15.5 [CytoView hg19]  H19 - 11p15.5 [CytoView hg38]
ImmunoBaseENSG00000130600
Genome Data Viewer NCBIH19 [Mapview hg19]  
OMIM103280   194070   
Gene and transcription
Genbank (Entrez)AK056774 AK092486 AK123560 AK311497 AL546946
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)H19
Gene ExpressionH19 [ NCBI-GEO ]   H19 [ EBI - ARRAY_EXPRESS ]   H19 [ SEEK ]   H19 [ MEM ]
Gene Expression Viewer (FireBrowse)H19 [ Firebrowse - Broad ]
GenevisibleExpression of H19 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283120
GTEX Portal (Tissue expression)H19
Human Protein AtlasENSG00000130600-H19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)H19
Human Protein Atlas [tissue]ENSG00000130600-H19 [tissue]
Protein Interaction databases
BioGRIDH19
STRING (EMBL)H19
ZODIACH19
Ontologies - Pathways
Litterature
PubMed438 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXH19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:11:50 CEST 2021

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