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H19 (H19, imprinted maternally expressed transcript (non-protein coding))

Identity

Other namesASM
ASM1
BWS
D11S813E
LINC00008
NCRNA00008
PRO2605
WT2
HGNC (Hugo) H19
LocusID (NCBI) 283120
Location 11p15.5
Location_base_pair Starts at 2016406 and ends at 2019065 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors AmeloblastomID5945

External links

Nomenclature
HGNC (Hugo)H19   4713
Cards
Entrez_Gene (NCBI)H19  283120  H19, imprinted maternally expressed transcript (non-protein coding)
GeneCards (Weizmann)H19
Ensembl hg19 (Hinxton)ENSG00000130600 [Gene_View]  chr11:2016406-2019065 [Contig_View]  H19 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130600 [Gene_View]  chr11:2016406-2019065 [Contig_View]  H19 [Vega]
ICGC DataPortalENSG00000130600
cBioPortalH19
AceView (NCBI)H19
Genatlas (Paris)H19
WikiGenes283120
SOURCE (Princeton)H19
Genomic and cartography
GoldenPath hg19 (UCSC)H19  -     chr11:2016406-2019065 -  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)H19  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblH19 - 11p15.5 [CytoView hg19]  H19 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIH19 [Mapview hg19]  H19 [Mapview hg38]
OMIM103280   130650   180860   180860   194070   194071   
Gene and transcription
Genbank (Entrez)AK092486 AK123560 AL546946 AL548405 BC006831
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_016165 NT_009237 NW_001838017 NW_004929378
Consensus coding sequences : CCDS (NCBI)H19
Cluster EST : UnigeneHs.533566 [ NCBI ]
CGAP (NCI)Hs.533566
Alternative Splicing : Fast-db (Paris)GSHG0005466
Alternative Splicing GalleryENSG00000130600
Gene ExpressionH19 [ NCBI-GEO ]     H19 [ SEEK ]   H19 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations283120
Human Protein AtlasENSG00000130600
IPIIPI00307804   IPI00001322   
Protein Interaction databases
FunCoupENSG00000130600
BioGRIDH19
IntegromeDBH19
STRING (EMBL)H19
Ontologies - Pathways
Litterature
PubMed102 Pubmed reference(s) in Entrez
CoreMineH19
GoPubMedH19
iHOPH19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 21:55:55 CET 2014

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jlhuret@AtlasGeneticsOncology.org.