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H1F0 (H1 histone family member 0)

Identity

Alias_namesH1(0)
H1-0
Alias_symbol (synonym)H10
Other aliasH1FV
HGNC (Hugo) H1F0
LocusID (NCBI) 3005
Atlas_Id 45623
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 38201114 and ends at 38203443 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C6orf1 (6p21.31) / H1F0 (22q13.1)H1F0 (22q13.1) / ACTB (7p22.1)H1F0 (22q13.1) / ADCY2 (5p15.31)
H1F0 (22q13.1) / AHSP (16p11.2)H1F0 (22q13.1) / C16orf46 (16q23.2)H1F0 (22q13.1) / H1F0 (22q13.1)
H1F0 (22q13.1) / KLF4 (9q31.2)H1F0 (22q13.1) / NINL (20p11.21)H1F0 (22q13.1) / SLC20A2 (8p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)H1F0   4714
Cards
Entrez_Gene (NCBI)H1F0  3005  H1 histone family member 0
AliasesH10; H1FV
GeneCards (Weizmann)H1F0
Ensembl hg19 (Hinxton)ENSG00000189060 [Gene_View]  chr22:38201114-38203443 [Contig_View]  H1F0 [Vega]
Ensembl hg38 (Hinxton)ENSG00000189060 [Gene_View]  chr22:38201114-38203443 [Contig_View]  H1F0 [Vega]
ICGC DataPortalENSG00000189060
TCGA cBioPortalH1F0
AceView (NCBI)H1F0
Genatlas (Paris)H1F0
WikiGenes3005
SOURCE (Princeton)H1F0
Genetics Home Reference (NIH)H1F0
Genomic and cartography
GoldenPath hg19 (UCSC)H1F0  -     chr22:38201114-38203443 +  22q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)H1F0  -     22q13.1   [Description]    (hg38-Dec_2013)
EnsemblH1F0 - 22q13.1 [CytoView hg19]  H1F0 - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBIH1F0 [Mapview hg19]  H1F0 [Mapview hg38]
OMIM142708   
Gene and transcription
Genbank (Entrez)AA206831 AK091372 AK312583 BC000145 BC029046
RefSeq transcript (Entrez)NM_005318
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)H1F0
Cluster EST : UnigeneHs.745024 [ NCBI ]
CGAP (NCI)Hs.745024
Alternative Splicing GalleryENSG00000189060
Gene ExpressionH1F0 [ NCBI-GEO ]   H1F0 [ EBI - ARRAY_EXPRESS ]   H1F0 [ SEEK ]   H1F0 [ MEM ]
Gene Expression Viewer (FireBrowse)H1F0 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3005
GTEX Portal (Tissue expression)H1F0
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07305   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP07305  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP07305
Splice isoforms : SwissVarP07305
PhosPhoSitePlusP07305
Domaine pattern : Prosite (Expaxy)H15 (PS51504)   
Domains : Interpro (EBI)Histone_H1/H5_H15    Histone_H5    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Linker_histone (PF00538)   
Domain families : Pfam (NCBI)pfam00538   
Domain families : Smart (EMBL)H15 (SM00526)  
Conserved Domain (NCBI)H1F0
DMDM Disease mutations3005
Blocks (Seattle)H1F0
SuperfamilyP07305
Human Protein AtlasENSG00000189060
Peptide AtlasP07305
HPRD00819
IPIIPI00550239   IPI00979041   
Protein Interaction databases
DIP (DOE-UCLA)P07305
IntAct (EBI)P07305
FunCoupENSG00000189060
BioGRIDH1F0
STRING (EMBL)H1F0
ZODIACH1F0
Ontologies - Pathways
QuickGOP07305
Ontology : AmiGOnucleosome  nuclear chromatin  protein binding  nucleus  nucleoplasm  nuclear euchromatin  Golgi apparatus  apoptotic DNA fragmentation  nucleosome assembly  actin cytoskeleton  chromatin DNA binding  poly(A) RNA binding  
Ontology : EGO-EBInucleosome  nuclear chromatin  protein binding  nucleus  nucleoplasm  nuclear euchromatin  Golgi apparatus  apoptotic DNA fragmentation  nucleosome assembly  actin cytoskeleton  chromatin DNA binding  poly(A) RNA binding  
NDEx NetworkH1F0
Atlas of Cancer Signalling NetworkH1F0
Wikipedia pathwaysH1F0
Orthology - Evolution
OrthoDB3005
GeneTree (enSembl)ENSG00000189060
Phylogenetic Trees/Animal Genes : TreeFamH1F0
HOVERGENP07305
HOGENOMP07305
Homologs : HomoloGeneH1F0
Homology/Alignments : Family Browser (UCSC)H1F0
Gene fusions - Rearrangements
Fusion : MitelmanH1F0/ACTB [22q13.1/7p22.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH1F0 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H1F0
dbVarH1F0
ClinVarH1F0
1000_GenomesH1F0 
Exome Variant ServerH1F0
ExAC (Exome Aggregation Consortium)H1F0 (select the gene name)
Genetic variants : HAPMAP3005
Genomic Variants (DGV)H1F0 [DGVbeta]
DECIPHER (Syndromes)22:38201114-38203443  ENSG00000189060
CONAN: Copy Number AnalysisH1F0 
Mutations
ICGC Data PortalH1F0 
TCGA Data PortalH1F0 
Broad Tumor PortalH1F0
OASIS PortalH1F0 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICH1F0  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDH1F0
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H1F0
DgiDB (Drug Gene Interaction Database)H1F0
DoCM (Curated mutations)H1F0 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H1F0 (select a term)
intoGenH1F0
Cancer3DH1F0(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142708   
Orphanet
MedgenH1F0
Genetic Testing Registry H1F0
NextProtP07305 [Medical]
TSGene3005
GENETestsH1F0
Huge Navigator H1F0 [HugePedia]
snp3D : Map Gene to Disease3005
BioCentury BCIQH1F0
ClinGenH1F0
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3005
Chemical/Pharm GKB GenePA29092
Clinical trialH1F0
Miscellaneous
canSAR (ICR)H1F0 (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH1F0
EVEXH1F0
GoPubMedH1F0
iHOPH1F0
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:08:30 CET 2017

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