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H1FNT (H1 histone family, member N, testis-specific)

Identity

Alias_namesH1 histone family, member N, testis-specific
Alias_symbol (synonym)HANP1
H1T2
Other aliasH1.7
HGNC (Hugo) H1FNT
LocusID (NCBI) 341567
Atlas_Id 64143
Location 12q13.11  [Link to chromosome band 12q13]
Location_base_pair Starts at 48722763 and ends at 48724062 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)H1FNT   24893
Cards
Entrez_Gene (NCBI)H1FNT  341567  H1 histone family, member N, testis-specific
AliasesH1.7; H1T2
GeneCards (Weizmann)H1FNT
Ensembl hg19 (Hinxton)ENSG00000187166 [Gene_View]  chr12:48722763-48724062 [Contig_View]  H1FNT [Vega]
Ensembl hg38 (Hinxton)ENSG00000187166 [Gene_View]  chr12:48722763-48724062 [Contig_View]  H1FNT [Vega]
ICGC DataPortalENSG00000187166
TCGA cBioPortalH1FNT
AceView (NCBI)H1FNT
Genatlas (Paris)H1FNT
WikiGenes341567
SOURCE (Princeton)H1FNT
Genetics Home Reference (NIH)H1FNT
Genomic and cartography
GoldenPath hg19 (UCSC)H1FNT  -     chr12:48722763-48724062 +  12q13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)H1FNT  -     12q13.11   [Description]    (hg38-Dec_2013)
EnsemblH1FNT - 12q13.11 [CytoView hg19]  H1FNT - 12q13.11 [CytoView hg38]
Mapping of homologs : NCBIH1FNT [Mapview hg19]  H1FNT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB121028 AY302593 BC118635 BC119787
RefSeq transcript (Entrez)NM_181788
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)H1FNT
Cluster EST : UnigeneHs.155833 [ NCBI ]
CGAP (NCI)Hs.155833
Alternative Splicing GalleryENSG00000187166
Gene ExpressionH1FNT [ NCBI-GEO ]   H1FNT [ EBI - ARRAY_EXPRESS ]   H1FNT [ SEEK ]   H1FNT [ MEM ]
Gene Expression Viewer (FireBrowse)H1FNT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341567
GTEX Portal (Tissue expression)H1FNT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ75WM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ75WM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ75WM6
Splice isoforms : SwissVarQ75WM6
PhosPhoSitePlusQ75WM6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)H1FNT
DMDM Disease mutations341567
Blocks (Seattle)H1FNT
SuperfamilyQ75WM6
Human Protein AtlasENSG00000187166
Peptide AtlasQ75WM6
HPRD17084
IPIIPI00376239   
Protein Interaction databases
DIP (DOE-UCLA)Q75WM6
IntAct (EBI)Q75WM6
FunCoupENSG00000187166
BioGRIDH1FNT
STRING (EMBL)H1FNT
ZODIACH1FNT
Ontologies - Pathways
QuickGOQ75WM6
Ontology : AmiGOnuclear chromatin  DNA binding  ATP binding  nucleus  multicellular organismal development  spermatid nucleus elongation  chromosome condensation  sperm chromatin condensation  
Ontology : EGO-EBInuclear chromatin  DNA binding  ATP binding  nucleus  multicellular organismal development  spermatid nucleus elongation  chromosome condensation  sperm chromatin condensation  
NDEx NetworkH1FNT
Atlas of Cancer Signalling NetworkH1FNT
Wikipedia pathwaysH1FNT
Orthology - Evolution
OrthoDB341567
GeneTree (enSembl)ENSG00000187166
Phylogenetic Trees/Animal Genes : TreeFamH1FNT
HOVERGENQ75WM6
HOGENOMQ75WM6
Homologs : HomoloGeneH1FNT
Homology/Alignments : Family Browser (UCSC)H1FNT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH1FNT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H1FNT
dbVarH1FNT
ClinVarH1FNT
1000_GenomesH1FNT 
Exome Variant ServerH1FNT
ExAC (Exome Aggregation Consortium)H1FNT (select the gene name)
Genetic variants : HAPMAP341567
Genomic Variants (DGV)H1FNT [DGVbeta]
DECIPHER (Syndromes)12:48722763-48724062  ENSG00000187166
CONAN: Copy Number AnalysisH1FNT 
Mutations
ICGC Data PortalH1FNT 
TCGA Data PortalH1FNT 
Broad Tumor PortalH1FNT
OASIS PortalH1FNT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICH1FNT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDH1FNT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H1FNT
DgiDB (Drug Gene Interaction Database)H1FNT
DoCM (Curated mutations)H1FNT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H1FNT (select a term)
intoGenH1FNT
Cancer3DH1FNT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenH1FNT
Genetic Testing Registry H1FNT
NextProtQ75WM6 [Medical]
TSGene341567
GENETestsH1FNT
Huge Navigator H1FNT [HugePedia]
snp3D : Map Gene to Disease341567
BioCentury BCIQH1FNT
ClinGenH1FNT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341567
Chemical/Pharm GKB GenePA143485486
Clinical trialH1FNT
Miscellaneous
canSAR (ICR)H1FNT (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH1FNT
EVEXH1FNT
GoPubMedH1FNT
iHOPH1FNT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:19 CET 2017

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