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H1FOO (H1 histone family, member O, oocyte-specific)

Identity

Alias_namesH1 histone family, member O, oocyte-specific
Other aliasH1.8
osH1
HGNC (Hugo) H1FOO
LocusID (NCBI) 132243
Atlas_Id 64144
Location 3q22.1  [Link to chromosome band 3q22]
Location_base_pair Starts at 129267228 and ends at 129270310 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)H1FOO   18463
Cards
Entrez_Gene (NCBI)H1FOO  132243  H1 histone family, member O, oocyte-specific
AliasesH1.8; osH1
GeneCards (Weizmann)H1FOO
Ensembl hg19 (Hinxton)ENSG00000178804 [Gene_View]  chr3:129267228-129270310 [Contig_View]  H1FOO [Vega]
Ensembl hg38 (Hinxton)ENSG00000178804 [Gene_View]  chr3:129267228-129270310 [Contig_View]  H1FOO [Vega]
ICGC DataPortalENSG00000178804
TCGA cBioPortalH1FOO
AceView (NCBI)H1FOO
Genatlas (Paris)H1FOO
WikiGenes132243
SOURCE (Princeton)H1FOO
Genetics Home Reference (NIH)H1FOO
Genomic and cartography
GoldenPath hg19 (UCSC)H1FOO  -     chr3:129267228-129270310 +  3q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)H1FOO  -     3q22.1   [Description]    (hg38-Dec_2013)
EnsemblH1FOO - 3q22.1 [CytoView hg19]  H1FOO - 3q22.1 [CytoView hg38]
Mapping of homologs : NCBIH1FOO [Mapview hg19]  H1FOO [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY158091 BC047943 BM564157
RefSeq transcript (Entrez)NM_001308262 NM_153833
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)H1FOO
Cluster EST : UnigeneHs.97358 [ NCBI ]
CGAP (NCI)Hs.97358
Alternative Splicing GalleryENSG00000178804
Gene ExpressionH1FOO [ NCBI-GEO ]   H1FOO [ EBI - ARRAY_EXPRESS ]   H1FOO [ SEEK ]   H1FOO [ MEM ]
Gene Expression Viewer (FireBrowse)H1FOO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132243
GTEX Portal (Tissue expression)H1FOO
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZA3
Splice isoforms : SwissVarQ8IZA3
PhosPhoSitePlusQ8IZA3
Domaine pattern : Prosite (Expaxy)H15 (PS51504)   
Domains : Interpro (EBI)Histone_H1/H5_H15    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Linker_histone (PF00538)   
Domain families : Pfam (NCBI)pfam00538   
Domain families : Smart (EMBL)H15 (SM00526)  
Conserved Domain (NCBI)H1FOO
DMDM Disease mutations132243
Blocks (Seattle)H1FOO
SuperfamilyQ8IZA3
Human Protein AtlasENSG00000178804
Peptide AtlasQ8IZA3
HPRD13621
IPIIPI00217955   IPI00790076   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZA3
IntAct (EBI)Q8IZA3
FunCoupENSG00000178804
BioGRIDH1FOO
STRING (EMBL)H1FOO
ZODIACH1FOO
Ontologies - Pathways
QuickGOQ8IZA3
Ontology : AmiGOnucleosome  female germ cell nucleus  nucleus  nucleolus  cytoplasm  nucleosome assembly  nucleosome positioning  nucleosomal DNA binding  regulation of DNA methylation  meiotic cell cycle  extracellular exosome  negative regulation of stem cell differentiation  
Ontology : EGO-EBInucleosome  female germ cell nucleus  nucleus  nucleolus  cytoplasm  nucleosome assembly  nucleosome positioning  nucleosomal DNA binding  regulation of DNA methylation  meiotic cell cycle  extracellular exosome  negative regulation of stem cell differentiation  
NDEx NetworkH1FOO
Atlas of Cancer Signalling NetworkH1FOO
Wikipedia pathwaysH1FOO
Orthology - Evolution
OrthoDB132243
GeneTree (enSembl)ENSG00000178804
Phylogenetic Trees/Animal Genes : TreeFamH1FOO
HOVERGENQ8IZA3
HOGENOMQ8IZA3
Homologs : HomoloGeneH1FOO
Homology/Alignments : Family Browser (UCSC)H1FOO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH1FOO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H1FOO
dbVarH1FOO
ClinVarH1FOO
1000_GenomesH1FOO 
Exome Variant ServerH1FOO
ExAC (Exome Aggregation Consortium)H1FOO (select the gene name)
Genetic variants : HAPMAP132243
Genomic Variants (DGV)H1FOO [DGVbeta]
DECIPHER (Syndromes)3:129267228-129270310  ENSG00000178804
CONAN: Copy Number AnalysisH1FOO 
Mutations
ICGC Data PortalH1FOO 
TCGA Data PortalH1FOO 
Broad Tumor PortalH1FOO
OASIS PortalH1FOO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICH1FOO  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDH1FOO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H1FOO
DgiDB (Drug Gene Interaction Database)H1FOO
DoCM (Curated mutations)H1FOO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H1FOO (select a term)
intoGenH1FOO
Cancer3DH1FOO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenH1FOO
Genetic Testing Registry H1FOO
NextProtQ8IZA3 [Medical]
TSGene132243
GENETestsH1FOO
Huge Navigator H1FOO [HugePedia]
snp3D : Map Gene to Disease132243
BioCentury BCIQH1FOO
ClinGenH1FOO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132243
Chemical/Pharm GKB GenePA134958422
Clinical trialH1FOO
Miscellaneous
canSAR (ICR)H1FOO (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH1FOO
EVEXH1FOO
GoPubMedH1FOO
iHOPH1FOO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:19 CET 2017

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