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H1FX-AS1 (H1FX antisense RNA 1)

Identity

Alias_namesC3orf47
chromosome 3 open reading frame 47
H1FX antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)FLJ34151
Other alias
HGNC (Hugo) H1FX-AS1
LocusID (NCBI) 339942
Atlas_Id 78194
Location 3q21.3  [Link to chromosome band 3q21]

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)H1FX-AS1   27953
Cards
Entrez_Gene (NCBI)H1FX-AS1  339942  H1FX antisense RNA 1
AliasesC3orf47
GeneCards (Weizmann)H1FX-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  H1FX-AS1 [Vega]
TCGA cBioPortalH1FX-AS1
AceView (NCBI)H1FX-AS1
Genatlas (Paris)H1FX-AS1
WikiGenes339942
SOURCE (Princeton)H1FX-AS1
Genetics Home Reference (NIH)H1FX-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)H1FX-AS1  -  
GoldenPath hg19 (UCSC)H1FX-AS1  -  
EnsemblH1FX-AS1 - [CytoView hg19]  H1FX-AS1 - [CytoView hg38]
Mapping of homologs : NCBIH1FX-AS1 [Mapview hg19]  H1FX-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL040547 AL353963 BC093941 BC101739 BM709882
RefSeq transcript (Entrez)NM_001025468
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H1FX-AS1
Cluster EST : UnigeneHs.450096 [ NCBI ]
CGAP (NCI)Hs.450096
Gene ExpressionH1FX-AS1 [ NCBI-GEO ]   H1FX-AS1 [ EBI - ARRAY_EXPRESS ]   H1FX-AS1 [ SEEK ]   H1FX-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)H1FX-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339942
GTEX Portal (Tissue expression)H1FX-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0G2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0G2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0G2
Splice isoforms : SwissVarQ4G0G2
PhosPhoSitePlusQ4G0G2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)H1FX-AS1
DMDM Disease mutations339942
Blocks (Seattle)H1FX-AS1
SuperfamilyQ4G0G2
Peptide AtlasQ4G0G2
HPRD18785
IPIIPI00402461   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0G2
IntAct (EBI)Q4G0G2
BioGRIDH1FX-AS1
STRING (EMBL)H1FX-AS1
ZODIACH1FX-AS1
Ontologies - Pathways
QuickGOQ4G0G2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkH1FX-AS1
Atlas of Cancer Signalling NetworkH1FX-AS1
Wikipedia pathwaysH1FX-AS1
Orthology - Evolution
OrthoDB339942
Phylogenetic Trees/Animal Genes : TreeFamH1FX-AS1
HOVERGENQ4G0G2
HOGENOMQ4G0G2
Homologs : HomoloGeneH1FX-AS1
Homology/Alignments : Family Browser (UCSC)H1FX-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH1FX-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H1FX-AS1
dbVarH1FX-AS1
ClinVarH1FX-AS1
1000_GenomesH1FX-AS1 
Exome Variant ServerH1FX-AS1
ExAC (Exome Aggregation Consortium)H1FX-AS1 (select the gene name)
Genetic variants : HAPMAP339942
Genomic Variants (DGV)H1FX-AS1 [DGVbeta]
DECIPHERH1FX-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH1FX-AS1 
Mutations
ICGC Data PortalH1FX-AS1 
TCGA Data PortalH1FX-AS1 
Broad Tumor PortalH1FX-AS1
OASIS PortalH1FX-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDH1FX-AS1
BioMutasearch H1FX-AS1
DgiDB (Drug Gene Interaction Database)H1FX-AS1
DoCM (Curated mutations)H1FX-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H1FX-AS1 (select a term)
intoGenH1FX-AS1
Cancer3DH1FX-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenH1FX-AS1
Genetic Testing Registry H1FX-AS1
NextProtQ4G0G2 [Medical]
TSGene339942
GENETestsH1FX-AS1
Target ValidationH1FX-AS1
Huge Navigator H1FX-AS1 [HugePedia]
snp3D : Map Gene to Disease339942
BioCentury BCIQH1FX-AS1
ClinGenH1FX-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339942
Chemical/Pharm GKB GenePA143485324
Clinical trialH1FX-AS1
Miscellaneous
canSAR (ICR)H1FX-AS1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH1FX-AS1
EVEXH1FX-AS1
GoPubMedH1FX-AS1
iHOPH1FX-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:10 CEST 2017

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