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H1FX (H1 histone family member X)

Identity

Alias_namesH1 histone family
Alias_symbol (synonym)MGC15959
MGC8350
H1X
Other aliasH1.10
HGNC (Hugo) H1FX
LocusID (NCBI) 8971
Atlas_Id 51133
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 129314771 and ends at 129316277 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATXN1 (6p22.3) / H1FX (3q21.3)H1FX (3q21.3) / H1FX (3q21.3)H1FX (3q21.3) / HEXIM1 (17q21.31)
PRR14L (22q12.2) / H1FX (3q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)H1FX   4722
Cards
Entrez_Gene (NCBI)H1FX  8971  H1 histone family member X
AliasesH1.10; H1X
GeneCards (Weizmann)H1FX
Ensembl hg19 (Hinxton)ENSG00000184897 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184897 [Gene_View]  chr3:129314771-129316277 [Contig_View]  H1FX [Vega]
ICGC DataPortalENSG00000184897
TCGA cBioPortalH1FX
AceView (NCBI)H1FX
Genatlas (Paris)H1FX
WikiGenes8971
SOURCE (Princeton)H1FX
Genetics Home Reference (NIH)H1FX
Genomic and cartography
GoldenPath hg38 (UCSC)H1FX  -     chr3:129314771-129316277 -  3q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H1FX  -     3q21.3   [Description]    (hg19-Feb_2009)
EnsemblH1FX - 3q21.3 [CytoView hg19]  H1FX - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBIH1FX [Mapview hg19]  H1FX [Mapview hg38]
OMIM602785   
Gene and transcription
Genbank (Entrez)BC000426 BC010435 D64142
RefSeq transcript (Entrez)NM_006026
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H1FX
Cluster EST : UnigeneHs.75307 [ NCBI ]
CGAP (NCI)Hs.75307
Alternative Splicing GalleryENSG00000184897
Gene ExpressionH1FX [ NCBI-GEO ]   H1FX [ EBI - ARRAY_EXPRESS ]   H1FX [ SEEK ]   H1FX [ MEM ]
Gene Expression Viewer (FireBrowse)H1FX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8971
GTEX Portal (Tissue expression)H1FX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92522   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92522  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92522
Splice isoforms : SwissVarQ92522
PhosPhoSitePlusQ92522
Domaine pattern : Prosite (Expaxy)H15 (PS51504)   
Domains : Interpro (EBI)Histone_H1/H5_H15    Histone_H5    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Linker_histone (PF00538)   
Domain families : Pfam (NCBI)pfam00538   
Domain families : Smart (EMBL)H15 (SM00526)  
Conserved Domain (NCBI)H1FX
DMDM Disease mutations8971
Blocks (Seattle)H1FX
PDB (SRS)2LSO   
PDB (PDBSum)2LSO   
PDB (IMB)2LSO   
PDB (RSDB)2LSO   
Structural Biology KnowledgeBase2LSO   
SCOP (Structural Classification of Proteins)2LSO   
CATH (Classification of proteins structures)2LSO   
SuperfamilyQ92522
Human Protein AtlasENSG00000184897
Peptide AtlasQ92522
HPRD04151
IPIIPI00021924   
Protein Interaction databases
DIP (DOE-UCLA)Q92522
IntAct (EBI)Q92522
FunCoupENSG00000184897
BioGRIDH1FX
STRING (EMBL)H1FX
ZODIACH1FX
Ontologies - Pathways
QuickGOQ92522
Ontology : AmiGOnucleosome  DNA binding  RNA binding  nucleus  nucleolus  nucleosome assembly  cadherin binding  
Ontology : EGO-EBInucleosome  DNA binding  RNA binding  nucleus  nucleolus  nucleosome assembly  cadherin binding  
NDEx NetworkH1FX
Atlas of Cancer Signalling NetworkH1FX
Wikipedia pathwaysH1FX
Orthology - Evolution
OrthoDB8971
GeneTree (enSembl)ENSG00000184897
Phylogenetic Trees/Animal Genes : TreeFamH1FX
HOVERGENQ92522
HOGENOMQ92522
Homologs : HomoloGeneH1FX
Homology/Alignments : Family Browser (UCSC)H1FX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH1FX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H1FX
dbVarH1FX
ClinVarH1FX
1000_GenomesH1FX 
Exome Variant ServerH1FX
ExAC (Exome Aggregation Consortium)H1FX (select the gene name)
Genetic variants : HAPMAP8971
Genomic Variants (DGV)H1FX [DGVbeta]
DECIPHERH1FX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH1FX 
Mutations
ICGC Data PortalH1FX 
TCGA Data PortalH1FX 
Broad Tumor PortalH1FX
OASIS PortalH1FX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICH1FX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDH1FX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H1FX
DgiDB (Drug Gene Interaction Database)H1FX
DoCM (Curated mutations)H1FX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H1FX (select a term)
intoGenH1FX
Cancer3DH1FX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602785   
Orphanet
MedgenH1FX
Genetic Testing Registry H1FX
NextProtQ92522 [Medical]
TSGene8971
GENETestsH1FX
Target ValidationH1FX
Huge Navigator H1FX [HugePedia]
snp3D : Map Gene to Disease8971
BioCentury BCIQH1FX
ClinGenH1FX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8971
Chemical/Pharm GKB GenePA29099
Clinical trialH1FX
Miscellaneous
canSAR (ICR)H1FX (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH1FX
EVEXH1FX
GoPubMedH1FX
iHOPH1FX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 17:02:40 CEST 2017

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