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H2AC1 (H2A clustered histone 1)

Identity

Alias (NCBI)H2AA
H2AFR
HIST1H2AA
TH2A
bA317E16.2
HGNC (Hugo) H2AC1
HGNC Alias symbbA317E16.2
H2AFR
HGNC Previous nameH2A histone family, member R
 histone 1, H2aa
 histone cluster 1, H2aa
LocusID (NCBI) 221613
Atlas_Id 64276
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 25726063 and ends at 25726562 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)H2AC1   18729
Cards
Entrez_Gene (NCBI)H2AC1    H2A clustered histone 1
AliasesH2AA; H2AFR; HIST1H2AA; TH2A; 
bA317E16.2
GeneCards (Weizmann)H2AC1
Ensembl hg19 (Hinxton)ENSG00000164508 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164508 [Gene_View]  ENSG00000164508 [Sequence]  chr6:25726063-25726562 [Contig_View]  H2AC1 [Vega]
ICGC DataPortalENSG00000164508
TCGA cBioPortalH2AC1
AceView (NCBI)H2AC1
Genatlas (Paris)H2AC1
SOURCE (Princeton)H2AC1
Genetics Home Reference (NIH)H2AC1
Genomic and cartography
GoldenPath hg38 (UCSC)H2AC1  -     chr6:25726063-25726562 -  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H2AC1  -     6p22.2   [Description]    (hg19-Feb_2009)
GoldenPathH2AC1 - 6p22.2 [CytoView hg19]  H2AC1 - 6p22.2 [CytoView hg38]
ImmunoBaseENSG00000164508
Genome Data Viewer NCBIH2AC1 [Mapview hg19]  
OMIM613499   
Gene and transcription
Genbank (Entrez)BC062211
RefSeq transcript (Entrez)NM_170745
Consensus coding sequences : CCDS (NCBI)H2AC1
Gene ExpressionH2AC1 [ NCBI-GEO ]   H2AC1 [ EBI - ARRAY_EXPRESS ]   H2AC1 [ SEEK ]   H2AC1 [ MEM ]
Gene Expression Viewer (FireBrowse)H2AC1 [ Firebrowse - Broad ]
GenevisibleExpression of H2AC1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221613
GTEX Portal (Tissue expression)H2AC1
Human Protein AtlasENSG00000164508-H2AC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QV6
PhosPhoSitePlusQ96QV6
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)H2AC1
PDB (RSDB)5GSU    5GT0   
PDB Europe5GSU    5GT0   
PDB (PDBSum)5GSU    5GT0   
PDB (IMB)5GSU    5GT0   
Structural Biology KnowledgeBase5GSU    5GT0   
SCOP (Structural Classification of Proteins)5GSU    5GT0   
CATH (Classification of proteins structures)5GSU    5GT0   
SuperfamilyQ96QV6
AlphaFold pdb e-kbQ96QV6   
Human Protein Atlas [tissue]ENSG00000164508-H2AC1 [tissue]
HPRD13653
Protein Interaction databases
DIP (DOE-UCLA)Q96QV6
IntAct (EBI)Q96QV6
BioGRIDH2AC1
STRING (EMBL)H2AC1
ZODIACH2AC1
Ontologies - Pathways
QuickGOQ96QV6
Ontology : AmiGOchromosome, telomeric region  nucleosome  DNA binding  nucleus  chromatin silencing  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBIchromosome, telomeric region  nucleosome  DNA binding  nucleus  chromatin silencing  protein heterodimerization activity  extracellular exosome  
NDEx NetworkH2AC1
Atlas of Cancer Signalling NetworkH2AC1
Wikipedia pathwaysH2AC1
Orthology - Evolution
OrthoDB221613
GeneTree (enSembl)ENSG00000164508
Phylogenetic Trees/Animal Genes : TreeFamH2AC1
Homologs : HomoloGeneH2AC1
Homology/Alignments : Family Browser (UCSC)H2AC1
Gene fusions - Rearrangements
Fusion : QuiverH2AC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2AC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H2AC1
dbVarH2AC1
ClinVarH2AC1
MonarchH2AC1
1000_GenomesH2AC1 
Exome Variant ServerH2AC1
GNOMAD BrowserENSG00000164508
Varsome BrowserH2AC1
ACMGH2AC1 variants
VarityQ96QV6
Genomic Variants (DGV)H2AC1 [DGVbeta]
DECIPHERH2AC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2AC1 
Mutations
ICGC Data PortalH2AC1 
TCGA Data PortalH2AC1 
Broad Tumor PortalH2AC1
OASIS PortalH2AC1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDH2AC1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaH2AC1
DgiDB (Drug Gene Interaction Database)H2AC1
DoCM (Curated mutations)H2AC1
CIViC (Clinical Interpretations of Variants in Cancer)H2AC1
Cancer3DH2AC1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613499   
Orphanet
DisGeNETH2AC1
MedgenH2AC1
Genetic Testing Registry H2AC1
NextProtQ96QV6 [Medical]
GENETestsH2AC1
Target ValidationH2AC1
Huge Navigator H2AC1 [HugePedia]
ClinGenH2AC1
Clinical trials, drugs, therapy
MyCancerGenomeH2AC1
Protein Interactions : CTDH2AC1
Pharm GKB GenePA134988774
PharosQ96QV6
Clinical trialH2AC1
Miscellaneous
canSAR (ICR)H2AC1
HarmonizomeH2AC1
DataMed IndexH2AC1
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXH2AC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:52:28 CEST 2021

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