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H2AC13 (H2A clustered histone 13)

Identity

Alias (NCBI)H2A/c
H2AC11
H2AC15
H2AC16
H2AC17
H2AFC
HIST1H2AI
HGNC (Hugo) H2AC13
HGNC Alias symbH2A/c
HGNC Previous nameH2AFC
HGNC Previous nameH2A histone family, member C
 histone 1, H2ai
 histone cluster 1, H2ai
LocusID (NCBI) 8329
Atlas_Id 64282
Location 6p22.1  [Link to chromosome band 6p22]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)H2AC13   4725
Cards
Entrez_Gene (NCBI)H2AC13    H2A clustered histone 13
AliasesH2A/c; H2AC11; H2AC15; H2AC16; 
H2AC17; H2AFC; HIST1H2AI
GeneCards (Weizmann)H2AC13
Ensembl hg19 (Hinxton)ENSG00000196747 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196747 [Gene_View]  ENSG00000196747 [Sequence]  - [Contig_View]  H2AC13 [Vega]
ICGC DataPortalENSG00000196747
TCGA cBioPortalH2AC13
AceView (NCBI)H2AC13
Genatlas (Paris)H2AC13
SOURCE (Princeton)H2AC13
Genetics Home Reference (NIH)H2AC13
Genomic and cartography
GoldenPath hg38 (UCSC)H2AC13  -  
GoldenPath hg19 (UCSC)H2AC13  -  
GoldenPathH2AC13 - [CytoView hg19]  H2AC13 - [CytoView hg38]
ImmunoBaseENSG00000196747
genome Data Viewer NCBIH2AC13 [Mapview hg19]  
OMIM602787   
Gene and transcription
Genbank (Entrez)AK311766 BC112254 BC112256
RefSeq transcript (Entrez)NM_003509
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H2AC13
Alternative Splicing GalleryENSG00000196747
Gene ExpressionH2AC13 [ NCBI-GEO ]   H2AC13 [ EBI - ARRAY_EXPRESS ]   H2AC13 [ SEEK ]   H2AC13 [ MEM ]
Gene Expression Viewer (FireBrowse)H2AC13 [ Firebrowse - Broad ]
GenevisibleExpression of H2AC13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8329
GTEX Portal (Tissue expression)H2AC13
Human Protein AtlasENSG00000196747-H2AC13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C0S8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C0S8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C0S8
Splice isoforms : SwissVarP0C0S8
PhosPhoSitePlusP0C0S8
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)H2AC13
Blocks (Seattle)H2AC13
PDB (RSDB)4QYL    5KGF    6R0C    6RNY   
PDB Europe4QYL    5KGF    6R0C    6RNY   
PDB (PDBSum)4QYL    5KGF    6R0C    6RNY   
PDB (IMB)4QYL    5KGF    6R0C    6RNY   
Structural Biology KnowledgeBase4QYL    5KGF    6R0C    6RNY   
SCOP (Structural Classification of Proteins)4QYL    5KGF    6R0C    6RNY   
CATH (Classification of proteins structures)4QYL    5KGF    6R0C    6RNY   
SuperfamilyP0C0S8
Human Protein Atlas [tissue]ENSG00000196747-H2AC13 [tissue]
Peptide AtlasP0C0S8
HPRD04153
IPIIPI00291764   IPI00552873   
Protein Interaction databases
DIP (DOE-UCLA)P0C0S8
IntAct (EBI)P0C0S8
BioGRIDH2AC13
STRING (EMBL)H2AC13
ZODIACH2AC13
Ontologies - Pathways
QuickGOP0C0S8
Ontology : AmiGOnucleosome  nuclear chromatin  DNA binding  protein binding  nucleus  nucleus  chromatin organization  biological_process  enzyme binding  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  nuclear chromatin  DNA binding  protein binding  nucleus  nucleus  chromatin organization  biological_process  enzyme binding  protein heterodimerization activity  extracellular exosome  
NDEx NetworkH2AC13
Atlas of Cancer Signalling NetworkH2AC13
Wikipedia pathwaysH2AC13
Orthology - Evolution
OrthoDB8329
GeneTree (enSembl)ENSG00000196747
Phylogenetic Trees/Animal Genes : TreeFamH2AC13
HOGENOMP0C0S8
Homologs : HomoloGeneH2AC13
Homology/Alignments : Family Browser (UCSC)H2AC13
Gene fusions - Rearrangements
Fusion : QuiverH2AC13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2AC13 [hg38]
dbVarH2AC13
ClinVarH2AC13
MonarchH2AC13
1000_GenomesH2AC13 
Exome Variant ServerH2AC13
GNOMAD BrowserENSG00000196747
Varsome BrowserH2AC13
Genomic Variants (DGV)H2AC13 [DGVbeta]
DECIPHERH2AC13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2AC13 
Mutations
ICGC Data PortalH2AC13 
TCGA Data PortalH2AC13 
Broad Tumor PortalH2AC13
OASIS PortalH2AC13 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDH2AC13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H2AC13
DgiDB (Drug Gene Interaction Database)H2AC13
DoCM (Curated mutations)H2AC13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H2AC13 (select a term)
intoGenH2AC13
Cancer3DH2AC13(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602787   
Orphanet
DisGeNETH2AC13
MedgenH2AC13
Genetic Testing Registry H2AC13
NextProtP0C0S8 [Medical]
GENETestsH2AC13
Target ValidationH2AC13
Huge Navigator H2AC13 [HugePedia]
ClinGenH2AC13
Clinical trials, drugs, therapy
MyCancerGenomeH2AC13
Protein Interactions : CTD
Pharm GKB GenePA29102
Clinical trialH2AC13
Miscellaneous
canSAR (ICR)H2AC13 (select the gene name)
HarmonizomeH2AC13
DataMed IndexH2AC13
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH2AC13
EVEXH2AC13
GoPubMedH2AC13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:42:58 CET 2020

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