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H2AC17 (H2A clustered histone 17)

Identity

Alias (NCBI)H2A.1
H2A/n
H2AC11
H2AC13
H2AC15
H2AC16
H2AFN
HIST1H2AM
dJ193B12.1
HGNC (Hugo) H2AC17
HGNC Alias symbH2A/n
H2A.1
HGNC Previous nameH2AFN
HGNC Previous nameH2A histone family, member N
 histone 1, H2am
 histone cluster 1, H2am
LocusID (NCBI) 8336
Atlas_Id 64286
Location 6p22.1  [Link to chromosome band 6p22]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)H2AC17   4735
Cards
Entrez_Gene (NCBI)H2AC17    H2A clustered histone 17
AliasesH2A.1; H2A/n; H2AC11; H2AC13; 
H2AC15; H2AC16; H2AFN; HIST1H2AM; dJ193B12.1
GeneCards (Weizmann)H2AC17
Ensembl hg19 (Hinxton)ENSG00000278677 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278677 [Gene_View]  ENSG00000278677 [Sequence]  - [Contig_View]  H2AC17 [Vega]
ICGC DataPortalENSG00000278677
TCGA cBioPortalH2AC17
AceView (NCBI)H2AC17
Genatlas (Paris)H2AC17
SOURCE (Princeton)H2AC17
Genetics Home Reference (NIH)H2AC17
Genomic and cartography
GoldenPath hg38 (UCSC)H2AC17  -  
GoldenPath hg19 (UCSC)H2AC17  -  
GoldenPathH2AC17 - [CytoView hg19]  H2AC17 - [CytoView hg38]
ImmunoBaseENSG00000278677
genome Data Viewer NCBIH2AC17 [Mapview hg19]  
OMIM602796   
Gene and transcription
Genbank (Entrez)AK312224 BC032756
RefSeq transcript (Entrez)NM_003514
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H2AC17
Alternative Splicing GalleryENSG00000278677
Gene ExpressionH2AC17 [ NCBI-GEO ]   H2AC17 [ EBI - ARRAY_EXPRESS ]   H2AC17 [ SEEK ]   H2AC17 [ MEM ]
Gene Expression Viewer (FireBrowse)H2AC17 [ Firebrowse - Broad ]
GenevisibleExpression of H2AC17 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8336
GTEX Portal (Tissue expression)H2AC17
Human Protein AtlasENSG00000278677-H2AC17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C0S8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C0S8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C0S8
Splice isoforms : SwissVarP0C0S8
PhosPhoSitePlusP0C0S8
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)H2AC17
Blocks (Seattle)H2AC17
PDB (RSDB)4QYL    5KGF    6R0C    6RNY   
PDB Europe4QYL    5KGF    6R0C    6RNY   
PDB (PDBSum)4QYL    5KGF    6R0C    6RNY   
PDB (IMB)4QYL    5KGF    6R0C    6RNY   
Structural Biology KnowledgeBase4QYL    5KGF    6R0C    6RNY   
SCOP (Structural Classification of Proteins)4QYL    5KGF    6R0C    6RNY   
CATH (Classification of proteins structures)4QYL    5KGF    6R0C    6RNY   
SuperfamilyP0C0S8
Human Protein Atlas [tissue]ENSG00000278677-H2AC17 [tissue]
Peptide AtlasP0C0S8
HPRD09106
Protein Interaction databases
DIP (DOE-UCLA)P0C0S8
IntAct (EBI)P0C0S8
BioGRIDH2AC17
STRING (EMBL)H2AC17
ZODIACH2AC17
Ontologies - Pathways
QuickGOP0C0S8
Ontology : AmiGOnucleosome  nuclear chromatin  DNA binding  protein binding  nucleus  nucleus  chromatin organization  biological_process  enzyme binding  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  nuclear chromatin  DNA binding  protein binding  nucleus  nucleus  chromatin organization  biological_process  enzyme binding  protein heterodimerization activity  extracellular exosome  
NDEx NetworkH2AC17
Atlas of Cancer Signalling NetworkH2AC17
Wikipedia pathwaysH2AC17
Orthology - Evolution
OrthoDB8336
GeneTree (enSembl)ENSG00000278677
Phylogenetic Trees/Animal Genes : TreeFamH2AC17
HOGENOMP0C0S8
Homologs : HomoloGeneH2AC17
Homology/Alignments : Family Browser (UCSC)H2AC17
Gene fusions - Rearrangements
Fusion : QuiverH2AC17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2AC17 [hg38]
dbVarH2AC17
ClinVarH2AC17
MonarchH2AC17
1000_GenomesH2AC17 
Exome Variant ServerH2AC17
GNOMAD BrowserENSG00000278677
Varsome BrowserH2AC17
Genomic Variants (DGV)H2AC17 [DGVbeta]
DECIPHERH2AC17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2AC17 
Mutations
ICGC Data PortalH2AC17 
TCGA Data PortalH2AC17 
Broad Tumor PortalH2AC17
OASIS PortalH2AC17 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDH2AC17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H2AC17
DgiDB (Drug Gene Interaction Database)H2AC17
DoCM (Curated mutations)H2AC17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H2AC17 (select a term)
intoGenH2AC17
Cancer3DH2AC17(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602796   
Orphanet
DisGeNETH2AC17
MedgenH2AC17
Genetic Testing Registry H2AC17
NextProtP0C0S8 [Medical]
GENETestsH2AC17
Target ValidationH2AC17
Huge Navigator H2AC17 [HugePedia]
ClinGenH2AC17
Clinical trials, drugs, therapy
MyCancerGenomeH2AC17
Protein Interactions : CTD
Pharm GKB GenePA29112
Clinical trialH2AC17
Miscellaneous
canSAR (ICR)H2AC17 (select the gene name)
HarmonizomeH2AC17
DataMed IndexH2AC17
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH2AC17
EVEXH2AC17
GoPubMedH2AC17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:42:58 CET 2020

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