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H2AFB1 (H2A histone family member B1)

Identity

Alias_namesH2A histone family, member B1
Other aliasH2A.Bbd
HGNC (Hugo) H2AFB1
LocusID (NCBI) 474382
Atlas_Id 64145
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154885042 and ends at 154885558 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)H2AFB1   22516
Cards
Entrez_Gene (NCBI)H2AFB1  474382  H2A histone family member B1
AliasesH2A.Bbd
GeneCards (Weizmann)H2AFB1
Ensembl hg19 (Hinxton)ENSG00000274183 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274183 [Gene_View]  chrX:154885042-154885558 [Contig_View]  H2AFB1 [Vega]
ICGC DataPortalENSG00000274183
TCGA cBioPortalH2AFB1
AceView (NCBI)H2AFB1
Genatlas (Paris)H2AFB1
WikiGenes474382
SOURCE (Princeton)H2AFB1
Genetics Home Reference (NIH)H2AFB1
Genomic and cartography
GoldenPath hg38 (UCSC)H2AFB1  -     chrX:154885042-154885558 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H2AFB1  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblH2AFB1 - Xq28 [CytoView hg19]  H2AFB1 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIH2AFB1 [Mapview hg19]  H2AFB1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC128034 CR542230
RefSeq transcript (Entrez)NM_001017990
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H2AFB1
Cluster EST : UnigeneHs.592246 [ NCBI ]
CGAP (NCI)Hs.592246
Alternative Splicing GalleryENSG00000274183
Gene ExpressionH2AFB1 [ NCBI-GEO ]   H2AFB1 [ EBI - ARRAY_EXPRESS ]   H2AFB1 [ SEEK ]   H2AFB1 [ MEM ]
Gene Expression Viewer (FireBrowse)H2AFB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)474382
GTEX Portal (Tissue expression)H2AFB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C5Y9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C5Y9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C5Y9
Splice isoforms : SwissVarP0C5Y9
PhosPhoSitePlusP0C5Y9
Domains : Interpro (EBI)Histone-fold    Histone_H2A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)H2AFB1
DMDM Disease mutations474382
Blocks (Seattle)H2AFB1
SuperfamilyP0C5Y9
Human Protein AtlasENSG00000274183
Peptide AtlasP0C5Y9
HPRD18664
IPIIPI00477017   
Protein Interaction databases
DIP (DOE-UCLA)P0C5Y9
IntAct (EBI)P0C5Y9
FunCoupENSG00000274183
BioGRIDH2AFB1
STRING (EMBL)H2AFB1
ZODIACH2AFB1
Ontologies - Pathways
QuickGOP0C5Y9
Ontology : AmiGOnuclear nucleosome  DNA binding  nucleus  nucleosome assembly  chromatin silencing  mRNA processing  transcriptionally active chromatin  protein heterodimerization activity  
Ontology : EGO-EBInuclear nucleosome  DNA binding  nucleus  nucleosome assembly  chromatin silencing  mRNA processing  transcriptionally active chromatin  protein heterodimerization activity  
Pathways : KEGGAlcoholism    Systemic lupus erythematosus   
NDEx NetworkH2AFB1
Atlas of Cancer Signalling NetworkH2AFB1
Wikipedia pathwaysH2AFB1
Orthology - Evolution
OrthoDB474382
GeneTree (enSembl)ENSG00000274183
Phylogenetic Trees/Animal Genes : TreeFamH2AFB1
HOVERGENP0C5Y9
HOGENOMP0C5Y9
Homologs : HomoloGeneH2AFB1
Homology/Alignments : Family Browser (UCSC)H2AFB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2AFB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H2AFB1
dbVarH2AFB1
ClinVarH2AFB1
1000_GenomesH2AFB1 
Exome Variant ServerH2AFB1
ExAC (Exome Aggregation Consortium)H2AFB1 (select the gene name)
Genetic variants : HAPMAP474382
Genomic Variants (DGV)H2AFB1 [DGVbeta]
DECIPHERH2AFB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2AFB1 
Mutations
ICGC Data PortalH2AFB1 
TCGA Data PortalH2AFB1 
Broad Tumor PortalH2AFB1
OASIS PortalH2AFB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICH2AFB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDH2AFB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H2AFB1
DgiDB (Drug Gene Interaction Database)H2AFB1
DoCM (Curated mutations)H2AFB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H2AFB1 (select a term)
intoGenH2AFB1
Cancer3DH2AFB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenH2AFB1
Genetic Testing Registry H2AFB1
NextProtP0C5Y9 [Medical]
TSGene474382
GENETestsH2AFB1
Target ValidationH2AFB1
Huge Navigator H2AFB1 [HugePedia]
snp3D : Map Gene to Disease474382
BioCentury BCIQH2AFB1
ClinGenH2AFB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD474382
Chemical/Pharm GKB GenePA134862083
Clinical trialH2AFB1
Miscellaneous
canSAR (ICR)H2AFB1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH2AFB1
EVEXH2AFB1
GoPubMedH2AFB1
iHOPH2AFB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:11 CEST 2017

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