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H2AFB2 (H2A histone family member B2)

Identity

Alias_namesH2A histone family, member B2
Other aliasH2A.Bbd
HGNC (Hugo) H2AFB2
LocusID (NCBI) 474381
Atlas_Id 64146
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154884969 and ends at 154885562 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)H2AFB2   18298
Cards
Entrez_Gene (NCBI)H2AFB2  474381  H2A histone family member B2
AliasesH2A.Bbd
GeneCards (Weizmann)H2AFB2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:154884969-154885562 [Contig_View]  H2AFB2 [Vega]
TCGA cBioPortalH2AFB2
AceView (NCBI)H2AFB2
Genatlas (Paris)H2AFB2
WikiGenes474381
SOURCE (Princeton)H2AFB2
Genetics Home Reference (NIH)H2AFB2
Genomic and cartography
GoldenPath hg38 (UCSC)H2AFB2  -     chrX:154884969-154885562 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H2AFB2  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblH2AFB2 - Xq28 [CytoView hg19]  H2AFB2 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIH2AFB2 [Mapview hg19]  H2AFB2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF254576 BC101409 BC101415 BC101417 BC101418
RefSeq transcript (Entrez)NM_001017991
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H2AFB2
Cluster EST : UnigeneHs.632841 [ NCBI ]
CGAP (NCI)Hs.632841
Gene ExpressionH2AFB2 [ NCBI-GEO ]   H2AFB2 [ EBI - ARRAY_EXPRESS ]   H2AFB2 [ SEEK ]   H2AFB2 [ MEM ]
Gene Expression Viewer (FireBrowse)H2AFB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)474381
GTEX Portal (Tissue expression)H2AFB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C5Z0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C5Z0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C5Z0
Splice isoforms : SwissVarP0C5Z0
PhosPhoSitePlusP0C5Z0
Domains : Interpro (EBI)Histone-fold    Histone_H2A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)H2AFB2
DMDM Disease mutations474381
Blocks (Seattle)H2AFB2
SuperfamilyP0C5Z0
Peptide AtlasP0C5Z0
HPRD18663
IPIIPI00044631   
Protein Interaction databases
DIP (DOE-UCLA)P0C5Z0
IntAct (EBI)P0C5Z0
BioGRIDH2AFB2
STRING (EMBL)H2AFB2
ZODIACH2AFB2
Ontologies - Pathways
QuickGOP0C5Z0
Ontology : AmiGOnuclear nucleosome  nuclear chromatin  DNA binding  nucleus  nucleosome assembly  chromatin silencing  mRNA processing  transcriptionally active chromatin  protein heterodimerization activity  
Ontology : EGO-EBInuclear nucleosome  nuclear chromatin  DNA binding  nucleus  nucleosome assembly  chromatin silencing  mRNA processing  transcriptionally active chromatin  protein heterodimerization activity  
Pathways : KEGGAlcoholism    Systemic lupus erythematosus   
NDEx NetworkH2AFB2
Atlas of Cancer Signalling NetworkH2AFB2
Wikipedia pathwaysH2AFB2
Orthology - Evolution
OrthoDB474381
Phylogenetic Trees/Animal Genes : TreeFamH2AFB2
HOVERGENP0C5Z0
HOGENOMP0C5Z0
Homologs : HomoloGeneH2AFB2
Homology/Alignments : Family Browser (UCSC)H2AFB2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2AFB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H2AFB2
dbVarH2AFB2
ClinVarH2AFB2
1000_GenomesH2AFB2 
Exome Variant ServerH2AFB2
ExAC (Exome Aggregation Consortium)H2AFB2 (select the gene name)
Genetic variants : HAPMAP474381
Genomic Variants (DGV)H2AFB2 [DGVbeta]
DECIPHERH2AFB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2AFB2 
Mutations
ICGC Data PortalH2AFB2 
TCGA Data PortalH2AFB2 
Broad Tumor PortalH2AFB2
OASIS PortalH2AFB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICH2AFB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDH2AFB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H2AFB2
DgiDB (Drug Gene Interaction Database)H2AFB2
DoCM (Curated mutations)H2AFB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H2AFB2 (select a term)
intoGenH2AFB2
Cancer3DH2AFB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenH2AFB2
Genetic Testing Registry H2AFB2
NextProtP0C5Z0 [Medical]
TSGene474381
GENETestsH2AFB2
Target ValidationH2AFB2
Huge Navigator H2AFB2 [HugePedia]
snp3D : Map Gene to Disease474381
BioCentury BCIQH2AFB2
ClinGenH2AFB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD474381
Chemical/Pharm GKB GenePA134903705
Clinical trialH2AFB2
Miscellaneous
canSAR (ICR)H2AFB2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH2AFB2
EVEXH2AFB2
GoPubMedH2AFB2
iHOPH2AFB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:11 CEST 2017

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