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H2AFB3 (H2A histone family member B3)

Identity

Alias_namesH2AFB
H2A histone family, member B
H2A histone family, member B3
Other aliasH2ABBD
HGNC (Hugo) H2AFB3
LocusID (NCBI) 83740
Atlas_Id 64147
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154885042 and ends at 154885558 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)H2AFB3   14455
Cards
Entrez_Gene (NCBI)H2AFB3  83740  H2A histone family member B3
AliasesH2ABBD; H2AFB
GeneCards (Weizmann)H2AFB3
Ensembl hg19 (Hinxton)ENSG00000277745 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277745 [Gene_View]  chrX:154885042-154885558 [Contig_View]  H2AFB3 [Vega]
ICGC DataPortalENSG00000277745
TCGA cBioPortalH2AFB3
AceView (NCBI)H2AFB3
Genatlas (Paris)H2AFB3
WikiGenes83740
SOURCE (Princeton)H2AFB3
Genetics Home Reference (NIH)H2AFB3
Genomic and cartography
GoldenPath hg38 (UCSC)H2AFB3  -     chrX:154885042-154885558 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H2AFB3  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblH2AFB3 - Xq28 [CytoView hg19]  H2AFB3 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIH2AFB3 [Mapview hg19]  H2AFB3 [Mapview hg38]
OMIM300445   
Gene and transcription
Genbank (Entrez)AF254576 BC101409 BC101415 BC101417 BC101418
RefSeq transcript (Entrez)NM_080720
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H2AFB3
Cluster EST : UnigeneHs.632841 [ NCBI ]
CGAP (NCI)Hs.632841
Alternative Splicing GalleryENSG00000277745
Gene ExpressionH2AFB3 [ NCBI-GEO ]   H2AFB3 [ EBI - ARRAY_EXPRESS ]   H2AFB3 [ SEEK ]   H2AFB3 [ MEM ]
Gene Expression Viewer (FireBrowse)H2AFB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83740
GTEX Portal (Tissue expression)H2AFB3
Human Protein AtlasENSG00000277745-H2AFB3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C5Z0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C5Z0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C5Z0
Splice isoforms : SwissVarP0C5Z0
PhosPhoSitePlusP0C5Z0
Domains : Interpro (EBI)Histone-fold    Histone_H2A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)H2AFB3
DMDM Disease mutations83740
Blocks (Seattle)H2AFB3
SuperfamilyP0C5Z0
Human Protein Atlas [tissue]ENSG00000277745-H2AFB3 [tissue]
Peptide AtlasP0C5Z0
Protein Interaction databases
DIP (DOE-UCLA)P0C5Z0
IntAct (EBI)P0C5Z0
FunCoupENSG00000277745
BioGRIDH2AFB3
STRING (EMBL)H2AFB3
ZODIACH2AFB3
Ontologies - Pathways
QuickGOP0C5Z0
Ontology : AmiGOnuclear nucleosome  nuclear chromatin  DNA binding  nucleus  nucleosome assembly  chromatin silencing  mRNA processing  transcriptionally active chromatin  protein heterodimerization activity  
Ontology : EGO-EBInuclear nucleosome  nuclear chromatin  DNA binding  nucleus  nucleosome assembly  chromatin silencing  mRNA processing  transcriptionally active chromatin  protein heterodimerization activity  
Pathways : KEGGAlcoholism    Systemic lupus erythematosus   
NDEx NetworkH2AFB3
Atlas of Cancer Signalling NetworkH2AFB3
Wikipedia pathwaysH2AFB3
Orthology - Evolution
OrthoDB83740
GeneTree (enSembl)ENSG00000277745
Phylogenetic Trees/Animal Genes : TreeFamH2AFB3
HOVERGENP0C5Z0
HOGENOMP0C5Z0
Homologs : HomoloGeneH2AFB3
Homology/Alignments : Family Browser (UCSC)H2AFB3
Gene fusions - Rearrangements
Tumor Fusion PortalH2AFB3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2AFB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H2AFB3
dbVarH2AFB3
ClinVarH2AFB3
1000_GenomesH2AFB3 
Exome Variant ServerH2AFB3
ExAC (Exome Aggregation Consortium)ENSG00000277745
GNOMAD BrowserENSG00000277745
Genetic variants : HAPMAP83740
Genomic Variants (DGV)H2AFB3 [DGVbeta]
DECIPHERH2AFB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2AFB3 
Mutations
ICGC Data PortalH2AFB3 
TCGA Data PortalH2AFB3 
Broad Tumor PortalH2AFB3
OASIS PortalH2AFB3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDH2AFB3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H2AFB3
DgiDB (Drug Gene Interaction Database)H2AFB3
DoCM (Curated mutations)H2AFB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H2AFB3 (select a term)
intoGenH2AFB3
Cancer3DH2AFB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300445   
Orphanet
DisGeNETH2AFB3
MedgenH2AFB3
Genetic Testing Registry H2AFB3
NextProtP0C5Z0 [Medical]
TSGene83740
GENETestsH2AFB3
Target ValidationH2AFB3
Huge Navigator H2AFB3 [HugePedia]
snp3D : Map Gene to Disease83740
BioCentury BCIQH2AFB3
ClinGenH2AFB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83740
Chemical/Pharm GKB GenePA29101
Clinical trialH2AFB3
Miscellaneous
canSAR (ICR)H2AFB3 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH2AFB3
EVEXH2AFB3
GoPubMedH2AFB3
iHOPH2AFB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:32:24 CET 2017

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