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H2AFJ (H2A histone family member J)

Identity

Alias_namesH2A histone family, member J
Alias_symbol (synonym)FLJ10903
MGC921
Other aliasH2AJ
HGNC (Hugo) H2AFJ
LocusID (NCBI) 55766
Atlas_Id 64148
Location 12p12.3  [Link to chromosome band 12p12]
Location_base_pair Starts at 14774336 and ends at 14778002 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)H2AFJ   14456
Cards
Entrez_Gene (NCBI)H2AFJ  55766  H2A histone family member J
AliasesH2AJ
GeneCards (Weizmann)H2AFJ
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:14774336-14778002 [Contig_View]  H2AFJ [Vega]
TCGA cBioPortalH2AFJ
AceView (NCBI)H2AFJ
Genatlas (Paris)H2AFJ
WikiGenes55766
SOURCE (Princeton)H2AFJ
Genetics Home Reference (NIH)H2AFJ
Genomic and cartography
GoldenPath hg38 (UCSC)H2AFJ  -     chr12:14774336-14778002 +  12p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H2AFJ  -     12p12.3   [Description]    (hg19-Feb_2009)
EnsemblH2AFJ - 12p12.3 [CytoView hg19]  H2AFJ - 12p12.3 [CytoView hg38]
Mapping of homologs : NCBIH2AFJ [Mapview hg19]  H2AFJ [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001765 AK303301 AL133626 BC003602 BM689354
RefSeq transcript (Entrez)NM_018267 NM_177925
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H2AFJ
Cluster EST : UnigeneHs.524280 [ NCBI ]
CGAP (NCI)Hs.524280
Gene ExpressionH2AFJ [ NCBI-GEO ]   H2AFJ [ EBI - ARRAY_EXPRESS ]   H2AFJ [ SEEK ]   H2AFJ [ MEM ]
Gene Expression Viewer (FireBrowse)H2AFJ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55766
GTEX Portal (Tissue expression)H2AFJ
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTM1
Splice isoforms : SwissVarQ9BTM1
PhosPhoSitePlusQ9BTM1
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)H2AFJ
DMDM Disease mutations55766
Blocks (Seattle)H2AFJ
PDB (SRS)4EDU   
PDB (PDBSum)4EDU   
PDB (IMB)4EDU   
PDB (RSDB)4EDU   
Structural Biology KnowledgeBase4EDU   
SCOP (Structural Classification of Proteins)4EDU   
CATH (Classification of proteins structures)4EDU   
SuperfamilyQ9BTM1
Peptide AtlasQ9BTM1
HPRD13622
IPIIPI00220855   IPI00102165   IPI00930144   IPI01015339   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTM1
IntAct (EBI)Q9BTM1
BioGRIDH2AFJ
STRING (EMBL)H2AFJ
ZODIACH2AFJ
Ontologies - Pathways
QuickGOQ9BTM1
Ontology : AmiGOnucleosome  nuclear chromatin  molecular_function  DNA binding  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  nuclear chromatin  molecular_function  DNA binding  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Pathways : KEGGAlcoholism    Systemic lupus erythematosus   
NDEx NetworkH2AFJ
Atlas of Cancer Signalling NetworkH2AFJ
Wikipedia pathwaysH2AFJ
Orthology - Evolution
OrthoDB55766
Phylogenetic Trees/Animal Genes : TreeFamH2AFJ
HOVERGENQ9BTM1
HOGENOMQ9BTM1
Homologs : HomoloGeneH2AFJ
Homology/Alignments : Family Browser (UCSC)H2AFJ
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2AFJ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H2AFJ
dbVarH2AFJ
ClinVarH2AFJ
1000_GenomesH2AFJ 
Exome Variant ServerH2AFJ
ExAC (Exome Aggregation Consortium)H2AFJ (select the gene name)
Genetic variants : HAPMAP55766
Genomic Variants (DGV)H2AFJ [DGVbeta]
DECIPHERH2AFJ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2AFJ 
Mutations
ICGC Data PortalH2AFJ 
TCGA Data PortalH2AFJ 
Broad Tumor PortalH2AFJ
OASIS PortalH2AFJ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICH2AFJ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDH2AFJ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H2AFJ
DgiDB (Drug Gene Interaction Database)H2AFJ
DoCM (Curated mutations)H2AFJ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H2AFJ (select a term)
intoGenH2AFJ
Cancer3DH2AFJ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenH2AFJ
Genetic Testing Registry H2AFJ
NextProtQ9BTM1 [Medical]
TSGene55766
GENETestsH2AFJ
Huge Navigator H2AFJ [HugePedia]
snp3D : Map Gene to Disease55766
BioCentury BCIQH2AFJ
ClinGenH2AFJ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55766
Chemical/Pharm GKB GenePA29108
Clinical trialH2AFJ
Miscellaneous
canSAR (ICR)H2AFJ (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH2AFJ
EVEXH2AFJ
GoPubMedH2AFJ
iHOPH2AFJ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:15:05 CEST 2017

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