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H2AFV (H2A histone family member V)

Identity

Alias_namesH2AV
H2A histone family, member V
Alias_symbol (synonym)MGC10170
MGC10831
MGC1947
Other aliasH2A.Z-2
HGNC (Hugo) H2AFV
LocusID (NCBI) 94239
Atlas_Id 64149
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 44833614 and ends at 44848126 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
H2AFV (7p13) / ABL2 (1q25.2)H2AFV (7p13) / ATP6V0A2 (12q24.31)H2AFV (7p13) / CDC45 (22q11.21)
H2AFV (7p13) / RARA (17q21.2)HNRNPA2B1 (7p15.2) / H2AFV (7p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)H2AFV   20664
Cards
Entrez_Gene (NCBI)H2AFV  94239  H2A histone family member V
AliasesH2A.Z-2; H2AV
GeneCards (Weizmann)H2AFV
Ensembl hg19 (Hinxton)ENSG00000105968 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105968 [Gene_View]  chr7:44833614-44848126 [Contig_View]  H2AFV [Vega]
ICGC DataPortalENSG00000105968
TCGA cBioPortalH2AFV
AceView (NCBI)H2AFV
Genatlas (Paris)H2AFV
WikiGenes94239
SOURCE (Princeton)H2AFV
Genetics Home Reference (NIH)H2AFV
Genomic and cartography
GoldenPath hg38 (UCSC)H2AFV  -     chr7:44833614-44848126 -  7p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H2AFV  -     7p13   [Description]    (hg19-Feb_2009)
EnsemblH2AFV - 7p13 [CytoView hg19]  H2AFV - 7p13 [CytoView hg38]
Mapping of homologs : NCBIH2AFV [Mapview hg19]  H2AFV [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209001 AF081192 AK023973 AK025785 AK129989
RefSeq transcript (Entrez)NM_012412 NM_138635 NM_201436 NM_201516 NM_201517
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H2AFV
Cluster EST : UnigeneHs.488189 [ NCBI ]
CGAP (NCI)Hs.488189
Alternative Splicing GalleryENSG00000105968
Gene ExpressionH2AFV [ NCBI-GEO ]   H2AFV [ EBI - ARRAY_EXPRESS ]   H2AFV [ SEEK ]   H2AFV [ MEM ]
Gene Expression Viewer (FireBrowse)H2AFV [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)94239
GTEX Portal (Tissue expression)H2AFV
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ71UI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ71UI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ71UI9
Splice isoforms : SwissVarQ71UI9
PhosPhoSitePlusQ71UI9
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)H2AFV
DMDM Disease mutations94239
Blocks (Seattle)H2AFV
PDB (SRS)3WAA   
PDB (PDBSum)3WAA   
PDB (IMB)3WAA   
PDB (RSDB)3WAA   
Structural Biology KnowledgeBase3WAA   
SCOP (Structural Classification of Proteins)3WAA   
CATH (Classification of proteins structures)3WAA   
SuperfamilyQ71UI9
Human Protein AtlasENSG00000105968
Peptide AtlasQ71UI9
HPRD13623
IPIIPI00018278   IPI00141938   IPI00398798   IPI00398806   IPI00927887   IPI00926183   IPI00398805   IPI00978913   
Protein Interaction databases
DIP (DOE-UCLA)Q71UI9
IntAct (EBI)Q71UI9
FunCoupENSG00000105968
BioGRIDH2AFV
STRING (EMBL)H2AFV
ZODIACH2AFV
Ontologies - Pathways
QuickGOQ71UI9
Ontology : AmiGOnucleosome  nuclear chromatin  molecular_function  DNA binding  nucleus  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  nuclear chromatin  molecular_function  DNA binding  nucleus  chromatin silencing  biological_process  protein heterodimerization activity  extracellular exosome  
Pathways : KEGGAlcoholism    Systemic lupus erythematosus   
NDEx NetworkH2AFV
Atlas of Cancer Signalling NetworkH2AFV
Wikipedia pathwaysH2AFV
Orthology - Evolution
OrthoDB94239
GeneTree (enSembl)ENSG00000105968
Phylogenetic Trees/Animal Genes : TreeFamH2AFV
HOVERGENQ71UI9
HOGENOMQ71UI9
Homologs : HomoloGeneH2AFV
Homology/Alignments : Family Browser (UCSC)H2AFV
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2AFV [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H2AFV
dbVarH2AFV
ClinVarH2AFV
1000_GenomesH2AFV 
Exome Variant ServerH2AFV
ExAC (Exome Aggregation Consortium)H2AFV (select the gene name)
Genetic variants : HAPMAP94239
Genomic Variants (DGV)H2AFV [DGVbeta]
DECIPHERH2AFV [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2AFV 
Mutations
ICGC Data PortalH2AFV 
TCGA Data PortalH2AFV 
Broad Tumor PortalH2AFV
OASIS PortalH2AFV [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICH2AFV  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDH2AFV
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H2AFV
DgiDB (Drug Gene Interaction Database)H2AFV
DoCM (Curated mutations)H2AFV (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H2AFV (select a term)
intoGenH2AFV
Cancer3DH2AFV(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenH2AFV
Genetic Testing Registry H2AFV
NextProtQ71UI9 [Medical]
TSGene94239
GENETestsH2AFV
Target ValidationH2AFV
Huge Navigator H2AFV [HugePedia]
snp3D : Map Gene to Disease94239
BioCentury BCIQH2AFV
ClinGenH2AFV
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD94239
Chemical/Pharm GKB GenePA134895050
Clinical trialH2AFV
Miscellaneous
canSAR (ICR)H2AFV (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH2AFV
EVEXH2AFV
GoPubMedH2AFV
iHOPH2AFV
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:51:54 CEST 2017

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