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H2AW (H2A.W histone)

Identity

Alias (NCBI)HIST3H2A
HGNC (Hugo) H2AW
HGNC Alias symbMGC3165
HGNC Previous nameHIST3H2A
HGNC Previous namehistone 3, H2a
 histone cluster 3, H2a
 histone cluster 3 H2A
LocusID (NCBI) 92815
Atlas_Id 58127
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228457364 and ends at 228457873 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)H2AW   20507
Cards
Entrez_Gene (NCBI)H2AW  92815  H2A.W histone
AliasesHIST3H2A
GeneCards (Weizmann)H2AW
Ensembl hg19 (Hinxton)ENSG00000181218 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181218 [Gene_View]  ENSG00000181218 [Sequence]  chr1:228457364-228457873 [Contig_View]  H2AW [Vega]
ICGC DataPortalENSG00000181218
TCGA cBioPortalH2AW
AceView (NCBI)H2AW
Genatlas (Paris)H2AW
WikiGenes92815
SOURCE (Princeton)H2AW
Genetics Home Reference (NIH)H2AW
Genomic and cartography
GoldenPath hg38 (UCSC)H2AW  -     chr1:228457364-228457873 -  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H2AW  -     -   [Description]    (hg19-Feb_2009)
GoldenPathH2AW - - [CytoView hg19]  H2AW - - [CytoView hg38]
ImmunoBaseENSG00000181218
genome Data Viewer NCBIH2AW [Mapview hg19]  
OMIM615015   
Gene and transcription
Genbank (Entrez)AK311930 BC001193 BC082269
RefSeq transcript (Entrez)NM_033445
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H2AW
Alternative Splicing GalleryENSG00000181218
Gene ExpressionH2AW [ NCBI-GEO ]   H2AW [ EBI - ARRAY_EXPRESS ]   H2AW [ SEEK ]   H2AW [ MEM ]
Gene Expression Viewer (FireBrowse)H2AW [ Firebrowse - Broad ]
GenevisibleExpression of H2AW in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92815
GTEX Portal (Tissue expression)H2AW
Human Protein AtlasENSG00000181218-H2AW [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L7L0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L7L0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L7L0
Splice isoforms : SwissVarQ7L7L0
PhosPhoSitePlusQ7L7L0
Domaine pattern : Prosite (Expaxy)HISTONE_H2A (PS00046)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A    Histone_H2A/H2B/H3    Histone_H2A_C    Histone_H2A_CS   
Domain families : Pfam (Sanger)Histone (PF00125)    Histone_H2A_C (PF16211)   
Domain families : Pfam (NCBI)pfam00125    pfam16211   
Domain families : Smart (EMBL)H2A (SM00414)  
Conserved Domain (NCBI)H2AW
DMDM Disease mutations92815
Blocks (Seattle)H2AW
SuperfamilyQ7L7L0
Human Protein Atlas [tissue]ENSG00000181218-H2AW [tissue]
Peptide AtlasQ7L7L0
IPIIPI00031562   
Protein Interaction databases
DIP (DOE-UCLA)Q7L7L0
IntAct (EBI)Q7L7L0
FunCoupENSG00000181218
BioGRIDH2AW
STRING (EMBL)H2AW
ZODIACH2AW
Ontologies - Pathways
QuickGOQ7L7L0
Ontology : AmiGOnuclear nucleosome  nuclear chromatin  DNA binding  DNA binding  protein binding  chromatin organization  nucleosome disassembly  chromatin silencing  protein heterodimerization activity  extracellular exosome  UV-damage excision repair  
Ontology : EGO-EBInuclear nucleosome  nuclear chromatin  DNA binding  DNA binding  protein binding  chromatin organization  nucleosome disassembly  chromatin silencing  protein heterodimerization activity  extracellular exosome  UV-damage excision repair  
NDEx NetworkH2AW
Atlas of Cancer Signalling NetworkH2AW
Wikipedia pathwaysH2AW
Orthology - Evolution
OrthoDB92815
GeneTree (enSembl)ENSG00000181218
Phylogenetic Trees/Animal Genes : TreeFamH2AW
HOGENOMQ7L7L0
Homologs : HomoloGeneH2AW
Homology/Alignments : Family Browser (UCSC)H2AW
Gene fusions - Rearrangements
Fusion : QuiverH2AW
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2AW [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H2AW
dbVarH2AW
ClinVarH2AW
1000_GenomesH2AW 
Exome Variant ServerH2AW
GNOMAD BrowserENSG00000181218
Varsome BrowserH2AW
Genetic variants : HAPMAP92815
Genomic Variants (DGV)H2AW [DGVbeta]
DECIPHERH2AW [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2AW 
Mutations
ICGC Data PortalH2AW 
TCGA Data PortalH2AW 
Broad Tumor PortalH2AW
OASIS PortalH2AW [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDH2AW
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H2AW
DgiDB (Drug Gene Interaction Database)H2AW
DoCM (Curated mutations)H2AW (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H2AW (select a term)
intoGenH2AW
Cancer3DH2AW(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615015   
Orphanet
DisGeNETH2AW
MedgenH2AW
Genetic Testing Registry H2AW
NextProtQ7L7L0 [Medical]
TSGene92815
GENETestsH2AW
Target ValidationH2AW
Huge Navigator H2AW [HugePedia]
snp3D : Map Gene to Disease92815
BioCentury BCIQH2AW
ClinGenH2AW
Clinical trials, drugs, therapy
Protein Interactions : CTD92815
Clinical trialH2AW
Miscellaneous
canSAR (ICR)H2AW (select the gene name)
HarmonizomeH2AW
DataMed IndexH2AW
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH2AW
EVEXH2AW
GoPubMedH2AW
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:16:02 CEST 2020

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