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H2BC15 (H2B clustered histone 15)

Identity

Alias (NCBI)H2B/d
H2BFD
HIST1H2BN
HGNC (Hugo) H2BC15
HGNC Alias symbH2B/d
HGNC Previous nameH2BFD
 HIST1H2BN
HGNC Previous nameH2B histone family, member D
 histone 1, H2bn
 histone cluster 1, H2bn
 histone cluster 1 H2B family member n
LocusID (NCBI) 8341
Atlas_Id 54974
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27838569 and ends at 27839110 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)H2BC15   4749
Cards
Entrez_Gene (NCBI)H2BC15    H2B clustered histone 15
AliasesH2B/d; H2BFD; HIST1H2BN
GeneCards (Weizmann)H2BC15
Ensembl hg19 (Hinxton)ENSG00000233822 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233822 [Gene_View]  ENSG00000233822 [Sequence]  chr6:27838569-27839110 [Contig_View]  H2BC15 [Vega]
ICGC DataPortalENSG00000233822
TCGA cBioPortalH2BC15
AceView (NCBI)H2BC15
Genatlas (Paris)H2BC15
SOURCE (Princeton)H2BC15
Genetics Home Reference (NIH)H2BC15
Genomic and cartography
GoldenPath hg38 (UCSC)H2BC15  -     chr6:27838569-27839110 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H2BC15  -     6p22.1   [Description]    (hg19-Feb_2009)
GoldenPathH2BC15 - 6p22.1 [CytoView hg19]  H2BC15 - 6p22.1 [CytoView hg38]
ImmunoBaseENSG00000233822
Genome Data Viewer NCBIH2BC15 [Mapview hg19]  
OMIM602801   
Gene and transcription
Genbank (Entrez)AK312228 BC009783 BC011372 BC101411 BC101412
RefSeq transcript (Entrez)NM_003520
Consensus coding sequences : CCDS (NCBI)H2BC15
Gene ExpressionH2BC15 [ NCBI-GEO ]   H2BC15 [ EBI - ARRAY_EXPRESS ]   H2BC15 [ SEEK ]   H2BC15 [ MEM ]
Gene Expression Viewer (FireBrowse)H2BC15 [ Firebrowse - Broad ]
GenevisibleExpression of H2BC15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8341
GTEX Portal (Tissue expression)H2BC15
Human Protein AtlasENSG00000233822-H2BC15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99877   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99877  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99877
PhosPhoSitePlusQ99877
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)H2BC15
SuperfamilyQ99877
AlphaFold pdb e-kbQ99877   
Human Protein Atlas [tissue]ENSG00000233822-H2BC15 [tissue]
HPRD11899
Protein Interaction databases
DIP (DOE-UCLA)Q99877
IntAct (EBI)Q99877
BioGRIDH2BC15
STRING (EMBL)H2BC15
ZODIACH2BC15
Ontologies - Pathways
QuickGOQ99877
Ontology : AmiGOnucleosome  DNA binding  DNA binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  extracellular exosome  
Ontology : EGO-EBInucleosome  DNA binding  DNA binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  extracellular exosome  
NDEx NetworkH2BC15
Atlas of Cancer Signalling NetworkH2BC15
Wikipedia pathwaysH2BC15
Orthology - Evolution
OrthoDB8341
GeneTree (enSembl)ENSG00000233822
Phylogenetic Trees/Animal Genes : TreeFamH2BC15
Homologs : HomoloGeneH2BC15
Homology/Alignments : Family Browser (UCSC)H2BC15
Gene fusions - Rearrangements
Fusion : QuiverH2BC15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2BC15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H2BC15
dbVarH2BC15
ClinVarH2BC15
MonarchH2BC15
1000_GenomesH2BC15 
Exome Variant ServerH2BC15
GNOMAD BrowserENSG00000233822
Varsome BrowserH2BC15
ACMGH2BC15 variants
VarityQ99877
Genomic Variants (DGV)H2BC15 [DGVbeta]
DECIPHERH2BC15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2BC15 
Mutations
ICGC Data PortalH2BC15 
TCGA Data PortalH2BC15 
Broad Tumor PortalH2BC15
OASIS PortalH2BC15 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDH2BC15
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaH2BC15
DgiDB (Drug Gene Interaction Database)H2BC15
DoCM (Curated mutations)H2BC15
CIViC (Clinical Interpretations of Variants in Cancer)H2BC15
Cancer3DH2BC15
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602801   
Orphanet
DisGeNETH2BC15
MedgenH2BC15
Genetic Testing Registry H2BC15
NextProtQ99877 [Medical]
GENETestsH2BC15
Target ValidationH2BC15
Huge Navigator H2BC15 [HugePedia]
ClinGenH2BC15
Clinical trials, drugs, therapy
MyCancerGenomeH2BC15
Protein Interactions : CTDH2BC15
PharosQ99877
Clinical trialH2BC15
Miscellaneous
canSAR (ICR)H2BC15
HarmonizomeH2BC15
ARCHS4H2BC15
DataMed IndexH2BC15
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXH2BC15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:13:32 CET 2022

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