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H2BC3 (H2B clustered histone 3)

Identity

Alias_namesH2BFF
HIST1H2BB
H2B histone family, member F
histone 1, H2bb
histone cluster 1, H2bb
histone cluster 1 H2B family member b
Alias_symbol (synonym)H2B/f
Other aliasH2B.1
HGNC (Hugo) H2BC3
LocusID (NCBI) 3018
Atlas_Id 56694
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26043227 and ends at 26043657 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)H2BC3   4751
Cards
Entrez_Gene (NCBI)H2BC3  3018  H2B clustered histone 3
AliasesH2B.1; H2B/f; H2BFF; HIST1H2BB
GeneCards (Weizmann)H2BC3
Ensembl hg19 (Hinxton)ENSG00000276410 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000276410 [Gene_View]  ENSG00000276410 [Sequence]  chr6:26043227-26043657 [Contig_View]  H2BC3 [Vega]
ICGC DataPortalENSG00000276410
TCGA cBioPortalH2BC3
AceView (NCBI)H2BC3
Genatlas (Paris)H2BC3
WikiGenes3018
SOURCE (Princeton)H2BC3
Genetics Home Reference (NIH)H2BC3
Genomic and cartography
GoldenPath hg38 (UCSC)H2BC3  -     chr6:26043227-26043657 -  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H2BC3  -     -   [Description]    (hg19-Feb_2009)
GoldenPathH2BC3 - - [CytoView hg19]  H2BC3 - - [CytoView hg38]
ImmunoBaseENSG00000276410
Mapping of homologs : NCBIH2BC3 [Mapview hg19]  H2BC3 [Mapview hg38]
OMIM602803   
Gene and transcription
Genbank (Entrez)BC096728
RefSeq transcript (Entrez)NM_021062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H2BC3
Cluster EST : UnigeneHs.553494 [ NCBI ]
CGAP (NCI)Hs.553494
Alternative Splicing GalleryENSG00000276410
Gene ExpressionH2BC3 [ NCBI-GEO ]   H2BC3 [ EBI - ARRAY_EXPRESS ]   H2BC3 [ SEEK ]   H2BC3 [ MEM ]
Gene Expression Viewer (FireBrowse)H2BC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3018
GTEX Portal (Tissue expression)H2BC3
Human Protein AtlasENSG00000276410-H2BC3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP33778   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP33778  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP33778
Splice isoforms : SwissVarP33778
PhosPhoSitePlusP33778
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)H2BC3
DMDM Disease mutations3018
Blocks (Seattle)H2BC3
PDB (RSDB)3X1S    3X1U   
PDB Europe3X1S    3X1U   
PDB (PDBSum)3X1S    3X1U   
PDB (IMB)3X1S    3X1U   
Structural Biology KnowledgeBase3X1S    3X1U   
SCOP (Structural Classification of Proteins)3X1S    3X1U   
CATH (Classification of proteins structures)3X1S    3X1U   
SuperfamilyP33778
Human Protein Atlas [tissue]ENSG00000276410-H2BC3 [tissue]
Peptide AtlasP33778
IPIIPI00220403   
Protein Interaction databases
DIP (DOE-UCLA)P33778
IntAct (EBI)P33778
FunCoupENSG00000276410
BioGRIDH2BC3
STRING (EMBL)H2BC3
ZODIACH2BC3
Ontologies - Pathways
QuickGOP33778
Ontology : AmiGOnuclear chromosome, telomeric region  nucleosome  DNA binding  DNA binding  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  
Ontology : EGO-EBInuclear chromosome, telomeric region  nucleosome  DNA binding  DNA binding  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  nucleosome assembly  protein ubiquitination  protein heterodimerization activity  
NDEx NetworkH2BC3
Atlas of Cancer Signalling NetworkH2BC3
Wikipedia pathwaysH2BC3
Orthology - Evolution
OrthoDB3018
GeneTree (enSembl)ENSG00000276410
Phylogenetic Trees/Animal Genes : TreeFamH2BC3
HOGENOMP33778
Homologs : HomoloGeneH2BC3
Homology/Alignments : Family Browser (UCSC)H2BC3
Gene fusions - Rearrangements
Fusion : QuiverH2BC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2BC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H2BC3
dbVarH2BC3
ClinVarH2BC3
1000_GenomesH2BC3 
Exome Variant ServerH2BC3
ExAC (Exome Aggregation Consortium)ENSG00000276410
GNOMAD BrowserENSG00000276410
Varsome BrowserH2BC3
Genetic variants : HAPMAP3018
Genomic Variants (DGV)H2BC3 [DGVbeta]
DECIPHERH2BC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2BC3 
Mutations
ICGC Data PortalH2BC3 
TCGA Data PortalH2BC3 
Broad Tumor PortalH2BC3
OASIS PortalH2BC3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDH2BC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H2BC3
DgiDB (Drug Gene Interaction Database)H2BC3
DoCM (Curated mutations)H2BC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H2BC3 (select a term)
intoGenH2BC3
Cancer3DH2BC3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602803   
Orphanet
DisGeNETH2BC3
MedgenH2BC3
Genetic Testing Registry H2BC3
NextProtP33778 [Medical]
TSGene3018
GENETestsH2BC3
Target ValidationH2BC3
Huge Navigator H2BC3 [HugePedia]
snp3D : Map Gene to Disease3018
BioCentury BCIQH2BC3
ClinGenH2BC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3018
Chemical/Pharm GKB GenePA29126
Clinical trialH2BC3
Miscellaneous
canSAR (ICR)H2BC3 (select the gene name)
DataMed IndexH2BC3
Probes
Litterature
PubMed92 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH2BC3
EVEXH2BC3
GoPubMedH2BC3
iHOPH2BC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:46:07 CET 2019

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