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H2BFM (H2B histone family member M)

Identity

Alias_namesH2B histone family, member M
Other alias-
HGNC (Hugo) H2BFM
LocusID (NCBI) 286436
Atlas_Id 64150
Location Xq22.2  [Link to chromosome band Xq22]
Location_base_pair Starts at 104039949 and ends at 104042454 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PKNOX1 (21q22.3) / H2BFM (Xq22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)H2BFM   27867
Cards
Entrez_Gene (NCBI)H2BFM  286436  H2B histone family member M
Aliases
GeneCards (Weizmann)H2BFM
Ensembl hg19 (Hinxton)ENSG00000101812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101812 [Gene_View]  chrX:104039949-104042454 [Contig_View]  H2BFM [Vega]
ICGC DataPortalENSG00000101812
TCGA cBioPortalH2BFM
AceView (NCBI)H2BFM
Genatlas (Paris)H2BFM
WikiGenes286436
SOURCE (Princeton)H2BFM
Genetics Home Reference (NIH)H2BFM
Genomic and cartography
GoldenPath hg38 (UCSC)H2BFM  -     chrX:104039949-104042454 +  Xq22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H2BFM  -     Xq22.2   [Description]    (hg19-Feb_2009)
EnsemblH2BFM - Xq22.2 [CytoView hg19]  H2BFM - Xq22.2 [CytoView hg38]
Mapping of homologs : NCBIH2BFM [Mapview hg19]  H2BFM [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI018051 AK093522
RefSeq transcript (Entrez)NM_001164416
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H2BFM
Cluster EST : UnigeneHs.376474 [ NCBI ]
CGAP (NCI)Hs.376474
Alternative Splicing GalleryENSG00000101812
Gene ExpressionH2BFM [ NCBI-GEO ]   H2BFM [ EBI - ARRAY_EXPRESS ]   H2BFM [ SEEK ]   H2BFM [ MEM ]
Gene Expression Viewer (FireBrowse)H2BFM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286436
GTEX Portal (Tissue expression)H2BFM
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C1H6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C1H6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C1H6
Splice isoforms : SwissVarP0C1H6
PhosPhoSitePlusP0C1H6
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)H2BFM
DMDM Disease mutations286436
Blocks (Seattle)H2BFM
SuperfamilyP0C1H6
Human Protein AtlasENSG00000101812
Peptide AtlasP0C1H6
IPIIPI00176980   IPI00943848   
Protein Interaction databases
DIP (DOE-UCLA)P0C1H6
IntAct (EBI)P0C1H6
FunCoupENSG00000101812
BioGRIDH2BFM
STRING (EMBL)H2BFM
ZODIACH2BFM
Ontologies - Pathways
QuickGOP0C1H6
Ontology : AmiGOnucleosome  DNA binding  nucleus  nucleosome assembly  protein heterodimerization activity  
Ontology : EGO-EBInucleosome  DNA binding  nucleus  nucleosome assembly  protein heterodimerization activity  
Pathways : KEGGAlcoholism    Viral carcinogenesis    Systemic lupus erythematosus   
NDEx NetworkH2BFM
Atlas of Cancer Signalling NetworkH2BFM
Wikipedia pathwaysH2BFM
Orthology - Evolution
OrthoDB286436
GeneTree (enSembl)ENSG00000101812
Phylogenetic Trees/Animal Genes : TreeFamH2BFM
HOVERGENP0C1H6
HOGENOMP0C1H6
Homologs : HomoloGeneH2BFM
Homology/Alignments : Family Browser (UCSC)H2BFM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2BFM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H2BFM
dbVarH2BFM
ClinVarH2BFM
1000_GenomesH2BFM 
Exome Variant ServerH2BFM
ExAC (Exome Aggregation Consortium)H2BFM (select the gene name)
Genetic variants : HAPMAP286436
Genomic Variants (DGV)H2BFM [DGVbeta]
DECIPHERH2BFM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2BFM 
Mutations
ICGC Data PortalH2BFM 
TCGA Data PortalH2BFM 
Broad Tumor PortalH2BFM
OASIS PortalH2BFM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICH2BFM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDH2BFM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H2BFM
DgiDB (Drug Gene Interaction Database)H2BFM
DoCM (Curated mutations)H2BFM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H2BFM (select a term)
intoGenH2BFM
Cancer3DH2BFM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenH2BFM
Genetic Testing Registry H2BFM
NextProtP0C1H6 [Medical]
TSGene286436
GENETestsH2BFM
Target ValidationH2BFM
Huge Navigator H2BFM [HugePedia]
snp3D : Map Gene to Disease286436
BioCentury BCIQH2BFM
ClinGenH2BFM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286436
Chemical/Pharm GKB GenePA142671702
Clinical trialH2BFM
Miscellaneous
canSAR (ICR)H2BFM (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH2BFM
EVEXH2BFM
GoPubMedH2BFM
iHOPH2BFM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:11 CEST 2017

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