Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

H2BFS (H2B histone family member S)

Identity

Alias_namesH2B histone family, member S
H2B histone family, member S (pseudogene)
H2B histone family member S (pseudogene)
Other alias-
HGNC (Hugo) H2BFS
LocusID (NCBI) 54145
Atlas_Id 64151
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 43565189 and ends at 43565648 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)H2BFS   4762
Cards
Entrez_Gene (NCBI)H2BFS  54145  H2B histone family member S
Aliases
GeneCards (Weizmann)H2BFS
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:43565189-43565648 [Contig_View]  H2BFS [Vega]
TCGA cBioPortalH2BFS
AceView (NCBI)H2BFS
Genatlas (Paris)H2BFS
WikiGenes54145
SOURCE (Princeton)H2BFS
Genetics Home Reference (NIH)H2BFS
Genomic and cartography
GoldenPath hg38 (UCSC)H2BFS  -     chr21:43565189-43565648 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H2BFS  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblH2BFS - 21q22.3 [CytoView hg19]  H2BFS - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIH2BFS [Mapview hg19]  H2BFS [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC126339 BC126369
RefSeq transcript (Entrez)NM_017445
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H2BFS
Gene ExpressionH2BFS [ NCBI-GEO ]   H2BFS [ EBI - ARRAY_EXPRESS ]   H2BFS [ SEEK ]   H2BFS [ MEM ]
Gene Expression Viewer (FireBrowse)H2BFS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54145
GTEX Portal (Tissue expression)H2BFS
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57053   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57053  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57053
Splice isoforms : SwissVarP57053
PhosPhoSitePlusP57053
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)H2BFS
DMDM Disease mutations54145
Blocks (Seattle)H2BFS
SuperfamilyP57053
Peptide AtlasP57053
HPRD11017
IPIIPI00477495   
Protein Interaction databases
DIP (DOE-UCLA)P57053
IntAct (EBI)P57053
BioGRIDH2BFS
STRING (EMBL)H2BFS
ZODIACH2BFS
Ontologies - Pathways
QuickGOP57053
Ontology : AmiGOnucleosome  innate immune response in mucosa  DNA binding  extracellular space  nucleus  nucleoplasm  cytosol  nucleosome assembly  antibacterial humoral response  substantia nigra development  protein heterodimerization activity  defense response to Gram-positive bacterium  
Ontology : EGO-EBInucleosome  innate immune response in mucosa  DNA binding  extracellular space  nucleus  nucleoplasm  cytosol  nucleosome assembly  antibacterial humoral response  substantia nigra development  protein heterodimerization activity  defense response to Gram-positive bacterium  
NDEx NetworkH2BFS
Atlas of Cancer Signalling NetworkH2BFS
Wikipedia pathwaysH2BFS
Orthology - Evolution
OrthoDB54145
Phylogenetic Trees/Animal Genes : TreeFamH2BFS
HOVERGENP57053
HOGENOMP57053
Homologs : HomoloGeneH2BFS
Homology/Alignments : Family Browser (UCSC)H2BFS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2BFS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H2BFS
dbVarH2BFS
ClinVarH2BFS
1000_GenomesH2BFS 
Exome Variant ServerH2BFS
ExAC (Exome Aggregation Consortium)H2BFS (select the gene name)
Genetic variants : HAPMAP54145
Genomic Variants (DGV)H2BFS [DGVbeta]
DECIPHERH2BFS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2BFS 
Mutations
ICGC Data PortalH2BFS 
TCGA Data PortalH2BFS 
Broad Tumor PortalH2BFS
OASIS PortalH2BFS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDH2BFS
BioMutasearch H2BFS
DgiDB (Drug Gene Interaction Database)H2BFS
DoCM (Curated mutations)H2BFS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H2BFS (select a term)
intoGenH2BFS
Cancer3DH2BFS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenH2BFS
Genetic Testing Registry H2BFS
NextProtP57053 [Medical]
TSGene54145
GENETestsH2BFS
Huge Navigator H2BFS [HugePedia]
snp3D : Map Gene to Disease54145
BioCentury BCIQH2BFS
ClinGenH2BFS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54145
Chemical/Pharm GKB GenePA29137
Clinical trialH2BFS
Miscellaneous
canSAR (ICR)H2BFS (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH2BFS
EVEXH2BFS
GoPubMedH2BFS
iHOPH2BFS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:15:06 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.