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H2BFWT (H2B histone family, member W, testis-specific)

Identity

Alias_namesH2B histone family, member W, testis-specific
Other alias-
HGNC (Hugo) H2BFWT
LocusID (NCBI) 158983
Atlas_Id 64152
Location Xq22.2  [Link to chromosome band Xq22]
Location_base_pair Starts at 103265719 and ends at 103268259 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)H2BFWT   27252
Cards
Entrez_Gene (NCBI)H2BFWT  158983  H2B histone family, member W, testis-specific
Aliases
GeneCards (Weizmann)H2BFWT
Ensembl hg19 (Hinxton)ENSG00000123569 [Gene_View]  chrX:103265719-103268259 [Contig_View]  H2BFWT [Vega]
Ensembl hg38 (Hinxton)ENSG00000123569 [Gene_View]  chrX:103265719-103268259 [Contig_View]  H2BFWT [Vega]
ICGC DataPortalENSG00000123569
TCGA cBioPortalH2BFWT
AceView (NCBI)H2BFWT
Genatlas (Paris)H2BFWT
WikiGenes158983
SOURCE (Princeton)H2BFWT
Genetics Home Reference (NIH)H2BFWT
Genomic and cartography
GoldenPath hg19 (UCSC)H2BFWT  -     chrX:103265719-103268259 -  Xq22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)H2BFWT  -     Xq22.2   [Description]    (hg38-Dec_2013)
EnsemblH2BFWT - Xq22.2 [CytoView hg19]  H2BFWT - Xq22.2 [CytoView hg38]
Mapping of homologs : NCBIH2BFWT [Mapview hg19]  H2BFWT [Mapview hg38]
OMIM300507   
Gene and transcription
Genbank (Entrez)AY283370 BC038109 BC118604 BC121816
RefSeq transcript (Entrez)NM_001002916
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016406 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)H2BFWT
Cluster EST : UnigeneHs.127778 [ NCBI ]
CGAP (NCI)Hs.127778
Alternative Splicing GalleryENSG00000123569
Gene ExpressionH2BFWT [ NCBI-GEO ]   H2BFWT [ EBI - ARRAY_EXPRESS ]   H2BFWT [ SEEK ]   H2BFWT [ MEM ]
Gene Expression Viewer (FireBrowse)H2BFWT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158983
GTEX Portal (Tissue expression)H2BFWT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z2G1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z2G1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z2G1
Splice isoforms : SwissVarQ7Z2G1
PhosPhoSitePlusQ7Z2G1
Domains : Interpro (EBI)Histone-fold    Histone_core_D    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)H2BFWT
DMDM Disease mutations158983
Blocks (Seattle)H2BFWT
SuperfamilyQ7Z2G1
Human Protein AtlasENSG00000123569
Peptide AtlasQ7Z2G1
HPRD15956
IPIIPI00873035   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z2G1
IntAct (EBI)Q7Z2G1
FunCoupENSG00000123569
BioGRIDH2BFWT
STRING (EMBL)H2BFWT
ZODIACH2BFWT
Ontologies - Pathways
QuickGOQ7Z2G1
Ontology : AmiGOnuclear nucleosome  DNA binding  nucleosome assembly  nuclear membrane  protein heterodimerization activity  
Ontology : EGO-EBInuclear nucleosome  DNA binding  nucleosome assembly  nuclear membrane  protein heterodimerization activity  
Pathways : KEGGAlcoholism    Viral carcinogenesis    Systemic lupus erythematosus   
NDEx NetworkH2BFWT
Atlas of Cancer Signalling NetworkH2BFWT
Wikipedia pathwaysH2BFWT
Orthology - Evolution
OrthoDB158983
GeneTree (enSembl)ENSG00000123569
Phylogenetic Trees/Animal Genes : TreeFamH2BFWT
HOVERGENQ7Z2G1
HOGENOMQ7Z2G1
Homologs : HomoloGeneH2BFWT
Homology/Alignments : Family Browser (UCSC)H2BFWT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2BFWT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H2BFWT
dbVarH2BFWT
ClinVarH2BFWT
1000_GenomesH2BFWT 
Exome Variant ServerH2BFWT
ExAC (Exome Aggregation Consortium)H2BFWT (select the gene name)
Genetic variants : HAPMAP158983
Genomic Variants (DGV)H2BFWT [DGVbeta]
DECIPHER (Syndromes)X:103265719-103268259  ENSG00000123569
CONAN: Copy Number AnalysisH2BFWT 
Mutations
ICGC Data PortalH2BFWT 
TCGA Data PortalH2BFWT 
Broad Tumor PortalH2BFWT
OASIS PortalH2BFWT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICH2BFWT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDH2BFWT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch H2BFWT
DgiDB (Drug Gene Interaction Database)H2BFWT
DoCM (Curated mutations)H2BFWT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H2BFWT (select a term)
intoGenH2BFWT
Cancer3DH2BFWT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300507   
Orphanet
MedgenH2BFWT
Genetic Testing Registry H2BFWT
NextProtQ7Z2G1 [Medical]
TSGene158983
GENETestsH2BFWT
Huge Navigator H2BFWT [HugePedia]
snp3D : Map Gene to Disease158983
BioCentury BCIQH2BFWT
ClinGenH2BFWT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158983
Chemical/Pharm GKB GenePA134930988
Clinical trialH2BFWT
Miscellaneous
canSAR (ICR)H2BFWT (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH2BFWT
EVEXH2BFWT
GoPubMedH2BFWT
iHOPH2BFWT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:21 CET 2017

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