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H2BU1 (H2B.U histone 1)

Identity

Alias_namesHIST3H2BB
histone 3, H2bb
histone cluster 3, H2bb
histone cluster 3 H2B family member b
Other aliasH2Bb
HGNC (Hugo) H2BU1
LocusID (NCBI) 128312
Atlas_Id 58089
Location 1q42.13  [Link to chromosome band 1q42]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)H2BU1   20514
Cards
Entrez_Gene (NCBI)H2BU1  128312  H2B.U histone 1
AliasesH2Bb; HIST3H2BB
GeneCards (Weizmann)H2BU1
Ensembl hg19 (Hinxton)ENSG00000196890 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196890 [Gene_View]  ENSG00000196890 [Sequence]  - [Contig_View]  H2BU1 [Vega]
ICGC DataPortalENSG00000196890
TCGA cBioPortalH2BU1
AceView (NCBI)H2BU1
Genatlas (Paris)H2BU1
WikiGenes128312
SOURCE (Princeton)H2BU1
Genetics Home Reference (NIH)H2BU1
Genomic and cartography
GoldenPath hg38 (UCSC)H2BU1  -  
GoldenPath hg19 (UCSC)H2BU1  -  
GoldenPathH2BU1 - [CytoView hg19]  H2BU1 - [CytoView hg38]
ImmunoBaseENSG00000196890
Mapping of homologs : NCBIH2BU1 [Mapview hg19]  H2BU1 [Mapview hg38]
OMIM615046   
Gene and transcription
Genbank (Entrez)AK091220 BC100855 BC100856 BC100857 BC100858
RefSeq transcript (Entrez)NM_175055
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H2BU1
Cluster EST : UnigeneHs.376691 [ NCBI ]
CGAP (NCI)Hs.376691
Alternative Splicing GalleryENSG00000196890
Gene ExpressionH2BU1 [ NCBI-GEO ]   H2BU1 [ EBI - ARRAY_EXPRESS ]   H2BU1 [ SEEK ]   H2BU1 [ MEM ]
Gene Expression Viewer (FireBrowse)H2BU1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128312
GTEX Portal (Tissue expression)H2BU1
Human Protein AtlasENSG00000196890-H2BU1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N257   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N257  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N257
Splice isoforms : SwissVarQ8N257
PhosPhoSitePlusQ8N257
Domaine pattern : Prosite (Expaxy)HISTONE_H2B (PS00357)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H2B   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H2B (SM00427)  
Conserved Domain (NCBI)H2BU1
DMDM Disease mutations128312
Blocks (Seattle)H2BU1
SuperfamilyQ8N257
Human Protein Atlas [tissue]ENSG00000196890-H2BU1 [tissue]
Peptide AtlasQ8N257
IPIIPI00166293   
Protein Interaction databases
DIP (DOE-UCLA)Q8N257
IntAct (EBI)Q8N257
FunCoupENSG00000196890
BioGRIDH2BU1
STRING (EMBL)H2BU1
ZODIACH2BU1
Ontologies - Pathways
QuickGOQ8N257
Ontology : AmiGOnucleosome  molecular_function  DNA binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  protein heterodimerization activity  
Ontology : EGO-EBInucleosome  molecular_function  DNA binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  nucleosome assembly  protein heterodimerization activity  
NDEx NetworkH2BU1
Atlas of Cancer Signalling NetworkH2BU1
Wikipedia pathwaysH2BU1
Orthology - Evolution
OrthoDB128312
GeneTree (enSembl)ENSG00000196890
Phylogenetic Trees/Animal Genes : TreeFamH2BU1
HOGENOMQ8N257
Homologs : HomoloGeneH2BU1
Homology/Alignments : Family Browser (UCSC)H2BU1
Gene fusions - Rearrangements
Fusion : QuiverH2BU1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH2BU1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H2BU1
dbVarH2BU1
ClinVarH2BU1
1000_GenomesH2BU1 
Exome Variant ServerH2BU1
ExAC (Exome Aggregation Consortium)ENSG00000196890
GNOMAD BrowserENSG00000196890
Varsome BrowserH2BU1
Genetic variants : HAPMAP128312
Genomic Variants (DGV)H2BU1 [DGVbeta]
DECIPHERH2BU1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH2BU1 
Mutations
ICGC Data PortalH2BU1 
TCGA Data PortalH2BU1 
Broad Tumor PortalH2BU1
OASIS PortalH2BU1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDH2BU1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H2BU1
DgiDB (Drug Gene Interaction Database)H2BU1
DoCM (Curated mutations)H2BU1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H2BU1 (select a term)
intoGenH2BU1
Cancer3DH2BU1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615046   
Orphanet
DisGeNETH2BU1
MedgenH2BU1
Genetic Testing Registry H2BU1
NextProtQ8N257 [Medical]
TSGene128312
GENETestsH2BU1
Target ValidationH2BU1
Huge Navigator H2BU1 [HugePedia]
snp3D : Map Gene to Disease128312
BioCentury BCIQH2BU1
ClinGenH2BU1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128312
Chemical/Pharm GKB GenePA134875583
Clinical trialH2BU1
Miscellaneous
canSAR (ICR)H2BU1 (select the gene name)
DataMed IndexH2BU1
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH2BU1
EVEXH2BU1
GoPubMedH2BU1
iHOPH2BU1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jan 27 14:45:02 CET 2020

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