Atlas of Genetics and Cytogenetics in Oncology and Haematology


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H3C14 (H3 clustered histone 14)

Identity

Alias (NCBI)H3
H3.2
H3/M
H3C13
H3C15
H3F2
H3FM
H3FN
HIST2H3C
HGNC (Hugo) H3C14
HGNC Alias symbMGC9629
H3/m
H3
H3.2
H3/M
HGNC Previous nameH3F2
 H3FM
 HIST2H3C
HGNC Previous nameH3 histone family, member M
 histone 2, H3c
 histone cluster 2, H3c
 histone cluster 2 H3 family member c
LocusID (NCBI) 126961
Atlas_Id 50806
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149840687 and ends at 149841208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)H3C14   20503
Cards
Entrez_Gene (NCBI)H3C14  126961  H3 clustered histone 14
AliasesH3; H3.2; H3/M; H3C13; 
H3C15; H3F2; H3FM; H3FN; HIST2H3C
GeneCards (Weizmann)H3C14
Ensembl hg19 (Hinxton)ENSG00000203811 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203811 [Gene_View]  ENSG00000203811 [Sequence]  chr1:149840687-149841208 [Contig_View]  H3C14 [Vega]
ICGC DataPortalENSG00000203811
TCGA cBioPortalH3C14
AceView (NCBI)H3C14
Genatlas (Paris)H3C14
WikiGenes126961
SOURCE (Princeton)H3C14
Genetics Home Reference (NIH)H3C14
Genomic and cartography
GoldenPath hg38 (UCSC)H3C14  -     chr1:149840687-149841208 -  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)H3C14  -     -   [Description]    (hg19-Feb_2009)
GoldenPathH3C14 - - [CytoView hg19]  H3C14 - - [CytoView hg38]
ImmunoBaseENSG00000203811
genome Data Viewer NCBIH3C14 [Mapview hg19]  
OMIM142780   
Gene and transcription
Genbank (Entrez)BC015544 BC074969 BC130635 BC130637
RefSeq transcript (Entrez)NM_021059
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H3C14
Alternative Splicing GalleryENSG00000203811
Gene ExpressionH3C14 [ NCBI-GEO ]   H3C14 [ EBI - ARRAY_EXPRESS ]   H3C14 [ SEEK ]   H3C14 [ MEM ]
Gene Expression Viewer (FireBrowse)H3C14 [ Firebrowse - Broad ]
GenevisibleExpression of H3C14 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126961
GTEX Portal (Tissue expression)H3C14
Human Protein AtlasENSG00000203811-H3C14 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ71DI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ71DI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ71DI3
Splice isoforms : SwissVarQ71DI3
PhosPhoSitePlusQ71DI3
Domaine pattern : Prosite (Expaxy)HISTONE_H3_1 (PS00322)    HISTONE_H3_2 (PS00959)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H3/CENP-A   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H3 (SM00428)  
Conserved Domain (NCBI)H3C14
DMDM Disease mutations126961
Blocks (Seattle)H3C14
PDB (RSDB)2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU    5VAC    6ACE    6FML   
PDB Europe2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU    5VAC    6ACE    6FML   
PDB (PDBSum)2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU    5VAC    6ACE    6FML   
PDB (IMB)2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU    5VAC    6ACE    6FML   
Structural Biology KnowledgeBase2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU    5VAC    6ACE    6FML   
SCOP (Structural Classification of Proteins)2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU    5VAC    6ACE    6FML   
CATH (Classification of proteins structures)2IIJ    2X4W    2X4X    2X4Y    3AV1    3DB3    3MO8    3QO2    3R93    4MZF    4MZG    4MZH    4OUC    5B0Y    5B0Z    5B40    5BO0    5CIU    5VAC    6ACE    6FML   
SuperfamilyQ71DI3
Human Protein Atlas [tissue]ENSG00000203811-H3C14 [tissue]
Peptide AtlasQ71DI3
HPRD11822
IPIIPI00171611   
Protein Interaction databases
DIP (DOE-UCLA)Q71DI3
IntAct (EBI)Q71DI3
FunCoupENSG00000203811
BioGRIDH3C14
STRING (EMBL)H3C14
ZODIACH3C14
Ontologies - Pathways
QuickGOQ71DI3
Ontology : AmiGOchromatin silencing at rDNA  nucleosome  DNA binding  protein binding  extracellular region  nucleus  nucleus  nucleus  nucleoplasm  chromatin organization  nucleosome assembly  blood coagulation  interleukin-7-mediated signaling pathway  cellular protein metabolic process  regulation of megakaryocyte differentiation  negative regulation of gene expression, epigenetic  protein heterodimerization activity  regulation of gene silencing by miRNA  extracellular exosome  
Ontology : EGO-EBIchromatin silencing at rDNA  nucleosome  DNA binding  protein binding  extracellular region  nucleus  nucleus  nucleus  nucleoplasm  chromatin organization  nucleosome assembly  blood coagulation  interleukin-7-mediated signaling pathway  cellular protein metabolic process  regulation of megakaryocyte differentiation  negative regulation of gene expression, epigenetic  protein heterodimerization activity  regulation of gene silencing by miRNA  extracellular exosome  
NDEx NetworkH3C14
Atlas of Cancer Signalling NetworkH3C14
Wikipedia pathwaysH3C14
Orthology - Evolution
OrthoDB126961
GeneTree (enSembl)ENSG00000203811
Phylogenetic Trees/Animal Genes : TreeFamH3C14
HOGENOMQ71DI3
Homologs : HomoloGeneH3C14
Homology/Alignments : Family Browser (UCSC)H3C14
Gene fusions - Rearrangements
Fusion : QuiverH3C14
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH3C14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H3C14
dbVarH3C14
ClinVarH3C14
MonarchH3C14
1000_GenomesH3C14 
Exome Variant ServerH3C14
GNOMAD BrowserENSG00000203811
Varsome BrowserH3C14
Genetic variants : HAPMAP126961
Genomic Variants (DGV)H3C14 [DGVbeta]
DECIPHERH3C14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH3C14 
Mutations
ICGC Data PortalH3C14 
TCGA Data PortalH3C14 
Broad Tumor PortalH3C14
OASIS PortalH3C14 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDH3C14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H3C14
DgiDB (Drug Gene Interaction Database)H3C14
DoCM (Curated mutations)H3C14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H3C14 (select a term)
intoGenH3C14
Cancer3DH3C14(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142780   
Orphanet
DisGeNETH3C14
MedgenH3C14
Genetic Testing Registry H3C14
NextProtQ71DI3 [Medical]
TSGene126961
GENETestsH3C14
Target ValidationH3C14
Huge Navigator H3C14 [HugePedia]
snp3D : Map Gene to Disease126961
BioCentury BCIQH3C14
ClinGenH3C14
Clinical trials, drugs, therapy
Protein Interactions : CTD126961
Clinical trialH3C14
Miscellaneous
canSAR (ICR)H3C14 (select the gene name)
HarmonizomeH3C14
DataMed IndexH3C14
Probes
Litterature
PubMed152 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH3C14
EVEXH3C14
GoPubMedH3C14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:13:49 CEST 2020

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