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H3F3C (H3 histone, family 3C)

Identity

Alias_namesH3 histone, family 3C
Alias_symbol (synonym)H3.5
Other alias
HGNC (Hugo) H3F3C
LocusID (NCBI) 440093
Atlas_Id 64155
Location 12p11.21  [Link to chromosome band 12p11]
Location_base_pair Starts at 31944119 and ends at 31945175 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)H3F3C   33164
Cards
Entrez_Gene (NCBI)H3F3C  440093  H3 histone, family 3C
AliasesH3.5
GeneCards (Weizmann)H3F3C
Ensembl hg19 (Hinxton)ENSG00000188375 [Gene_View]  chr12:31944119-31945175 [Contig_View]  H3F3C [Vega]
Ensembl hg38 (Hinxton)ENSG00000188375 [Gene_View]  chr12:31944119-31945175 [Contig_View]  H3F3C [Vega]
ICGC DataPortalENSG00000188375
TCGA cBioPortalH3F3C
AceView (NCBI)H3F3C
Genatlas (Paris)H3F3C
WikiGenes440093
SOURCE (Princeton)H3F3C
Genetics Home Reference (NIH)H3F3C
Genomic and cartography
GoldenPath hg19 (UCSC)H3F3C  -     chr12:31944119-31945175 -  12p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)H3F3C  -     12p11.21   [Description]    (hg38-Dec_2013)
EnsemblH3F3C - 12p11.21 [CytoView hg19]  H3F3C - 12p11.21 [CytoView hg38]
Mapping of homologs : NCBIH3F3C [Mapview hg19]  H3F3C [Mapview hg38]
OMIM616134   
Gene and transcription
Genbank (Entrez)AI016942 BC066906 HQ873957
RefSeq transcript (Entrez)NM_001013699
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)H3F3C
Cluster EST : UnigeneHs.448697 [ NCBI ]
CGAP (NCI)Hs.448697
Alternative Splicing GalleryENSG00000188375
Gene ExpressionH3F3C [ NCBI-GEO ]   H3F3C [ EBI - ARRAY_EXPRESS ]   H3F3C [ SEEK ]   H3F3C [ MEM ]
Gene Expression Viewer (FireBrowse)H3F3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440093
GTEX Portal (Tissue expression)H3F3C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NXT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NXT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NXT2
Splice isoforms : SwissVarQ6NXT2
PhosPhoSitePlusQ6NXT2
Domaine pattern : Prosite (Expaxy)HISTONE_H3_1 (PS00322)    HISTONE_H3_2 (PS00959)   
Domains : Interpro (EBI)Histone-fold    Histone_core_D    Histone_H3/CENP-A   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H3 (SM00428)  
Conserved Domain (NCBI)H3F3C
DMDM Disease mutations440093
Blocks (Seattle)H3F3C
PDB (SRS)3KV4   
PDB (PDBSum)3KV4   
PDB (IMB)3KV4   
PDB (RSDB)3KV4   
Structural Biology KnowledgeBase3KV4   
SCOP (Structural Classification of Proteins)3KV4   
CATH (Classification of proteins structures)3KV4   
SuperfamilyQ6NXT2
Human Protein AtlasENSG00000188375
Peptide AtlasQ6NXT2
HPRD18443
IPIIPI00419884   
Protein Interaction databases
DIP (DOE-UCLA)Q6NXT2
IntAct (EBI)Q6NXT2
FunCoupENSG00000188375
BioGRIDH3F3C
STRING (EMBL)H3F3C
ZODIACH3F3C
Ontologies - Pathways
QuickGOQ6NXT2
Ontology : AmiGOnucleosome  protein binding  nuclear euchromatin  positive regulation of cell growth  nucleosomal DNA binding  protein heterodimerization activity  
Ontology : EGO-EBInucleosome  protein binding  nuclear euchromatin  positive regulation of cell growth  nucleosomal DNA binding  protein heterodimerization activity  
Pathways : KEGGAlcoholism    Transcriptional misregulation in cancer    Systemic lupus erythematosus   
NDEx NetworkH3F3C
Atlas of Cancer Signalling NetworkH3F3C
Wikipedia pathwaysH3F3C
Orthology - Evolution
OrthoDB440093
GeneTree (enSembl)ENSG00000188375
Phylogenetic Trees/Animal Genes : TreeFamH3F3C
HOVERGENQ6NXT2
HOGENOMQ6NXT2
Homologs : HomoloGeneH3F3C
Homology/Alignments : Family Browser (UCSC)H3F3C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH3F3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H3F3C
dbVarH3F3C
ClinVarH3F3C
1000_GenomesH3F3C 
Exome Variant ServerH3F3C
ExAC (Exome Aggregation Consortium)H3F3C (select the gene name)
Genetic variants : HAPMAP440093
Genomic Variants (DGV)H3F3C [DGVbeta]
DECIPHER (Syndromes)12:31944119-31945175  ENSG00000188375
CONAN: Copy Number AnalysisH3F3C 
Mutations
ICGC Data PortalH3F3C 
TCGA Data PortalH3F3C 
Broad Tumor PortalH3F3C
OASIS PortalH3F3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICH3F3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDH3F3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H3F3C
DgiDB (Drug Gene Interaction Database)H3F3C
DoCM (Curated mutations)H3F3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H3F3C (select a term)
intoGenH3F3C
Cancer3DH3F3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616134   
Orphanet
MedgenH3F3C
Genetic Testing Registry H3F3C
NextProtQ6NXT2 [Medical]
TSGene440093
GENETestsH3F3C
Huge Navigator H3F3C [HugePedia]
snp3D : Map Gene to Disease440093
BioCentury BCIQH3F3C
ClinGenH3F3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440093
Chemical/Pharm GKB GenePA165512903
Clinical trialH3F3C
Miscellaneous
canSAR (ICR)H3F3C (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH3F3C
EVEXH3F3C
GoPubMedH3F3C
iHOPH3F3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:22 CET 2017

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