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H4C13 (H4 clustered histone 13)

Identity

Alias_namesH4FK
HIST1H4L
H4 histone family, member K
histone 1, H4l
histone cluster 1, H4l
histone cluster 1 H4 family member l
Alias_symbol (synonym)H4.k
H4/k
Other alias
HGNC (Hugo) H4C13
LocusID (NCBI) 8368
Atlas_Id 58106
Location 6p22.1  [Link to chromosome band 6p22]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)H4C13   4791
Cards
Entrez_Gene (NCBI)H4C13  8368  H4 clustered histone 13
AliasesH4.k; H4/k; H4FK; HIST1H4L
GeneCards (Weizmann)H4C13
Ensembl hg19 (Hinxton)ENSG00000275126 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275126 [Gene_View]  ENSG00000275126 [Sequence]  - [Contig_View]  H4C13 [Vega]
ICGC DataPortalENSG00000275126
TCGA cBioPortalH4C13
AceView (NCBI)H4C13
Genatlas (Paris)H4C13
WikiGenes8368
SOURCE (Princeton)H4C13
Genetics Home Reference (NIH)H4C13
Genomic and cartography
GoldenPath hg38 (UCSC)H4C13  -  
GoldenPath hg19 (UCSC)H4C13  -  
GoldenPathH4C13 - [CytoView hg19]  H4C13 - [CytoView hg38]
ImmunoBaseENSG00000275126
Mapping of homologs : NCBIH4C13 [Mapview hg19]  H4C13 [Mapview hg38]
OMIM602831   
Gene and transcription
Genbank (Entrez)AB451459 BC069392
RefSeq transcript (Entrez)NM_003546
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)H4C13
Cluster EST : UnigeneHs.533295 [ NCBI ]
CGAP (NCI)Hs.533295
Alternative Splicing GalleryENSG00000275126
Gene ExpressionH4C13 [ NCBI-GEO ]   H4C13 [ EBI - ARRAY_EXPRESS ]   H4C13 [ SEEK ]   H4C13 [ MEM ]
Gene Expression Viewer (FireBrowse)H4C13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8368
GTEX Portal (Tissue expression)H4C13
Human Protein AtlasENSG00000275126-H4C13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62805   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62805  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62805
Splice isoforms : SwissVarP62805
PhosPhoSitePlusP62805
Domaine pattern : Prosite (Expaxy)HISTONE_H4 (PS00047)   
Domains : Interpro (EBI)CENP-T/H4_C    Histone-fold    Histone_H4    Histone_H4_CS    TAF_TATA-bd   
Domain families : Pfam (Sanger)CENP-T_C (PF15511)   
Domain families : Pfam (NCBI)pfam15511   
Domain families : Smart (EMBL)H4 (SM00417)  TAF (SM00803)  
Conserved Domain (NCBI)H4C13
DMDM Disease mutations8368
Blocks (Seattle)H4C13
PDB (RSDB)1ZKK    2BQZ    2CV5    2IG0    2KWN    2KWO    2LVM    2QQS    2RJE    2RNY    2RS9    3A6N    3AFA    3AN2    3AV1    3AV2    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3CFS    3CFV    3F9W    3F9X    3F9Y    3F9Z    3IJ1    3JPX    3NQJ    3NQU    3O36    3QBY    3QZS    3QZT    3QZV    3R45    3UVW    3UVX    3UVY    3UW9    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3WTP    3X1S    3X1T    3X1U    3X1V    4GQB    4H9N    4H9O    4H9P    4H9Q    4H9R    4H9S    4HGA    4M38    4N3W    4N4F    4QUT    4QUU    4QYD    4U9W    4YM5    4YM6    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4YYM    4YYN    4Z2M    4Z5T    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5AY8    5B0Y    5B0Z    5B24    5B2I    5B2J    5B31    5B32    5B33    5B40    5BNV    5BNX    5BO0    5C3I    5CPI    5CPJ    5CPK    5FA5    5FFW    5FWE    5GSE    5GSU    5GT0    5GT3    5GTC    5GXQ    5JA4    5JRG    5KDM    5TEG    5X7X    5XF3    5XF4    5XF5    6BUZ    6C0W   
PDB Europe1ZKK    2BQZ    2CV5    2IG0    2KWN    2KWO    2LVM    2QQS    2RJE    2RNY    2RS9    3A6N    3AFA    3AN2    3AV1    3AV2    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3CFS    3CFV    3F9W    3F9X    3F9Y    3F9Z    3IJ1    3JPX    3NQJ    3NQU    3O36    3QBY    3QZS    3QZT    3QZV    3R45    3UVW    3UVX    3UVY    3UW9    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3WTP    3X1S    3X1T    3X1U    3X1V    4GQB    4H9N    4H9O    4H9P    4H9Q    4H9R    4H9S    4HGA    4M38    4N3W    4N4F    4QUT    4QUU    4QYD    4U9W    4YM5    4YM6    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4YYM    4YYN    4Z2M    4Z5T    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5AY8    5B0Y    5B0Z    5B24    5B2I    5B2J    5B31    5B32    5B33    5B40    5BNV    5BNX    5BO0    5C3I    5CPI    5CPJ    5CPK    5FA5    5FFW    5FWE    5GSE    5GSU    5GT0    5GT3    5GTC    5GXQ    5JA4    5JRG    5KDM    5TEG    5X7X    5XF3    5XF4    5XF5    6BUZ    6C0W   
PDB (PDBSum)1ZKK    2BQZ    2CV5    2IG0    2KWN    2KWO    2LVM    2QQS    2RJE    2RNY    2RS9    3A6N    3AFA    3AN2    3AV1    3AV2    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3CFS    3CFV    3F9W    3F9X    3F9Y    3F9Z    3IJ1    3JPX    3NQJ    3NQU    3O36    3QBY    3QZS    3QZT    3QZV    3R45    3UVW    3UVX    3UVY    3UW9    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3WTP    3X1S    3X1T    3X1U    3X1V    4GQB    4H9N    4H9O    4H9P    4H9Q    4H9R    4H9S    4HGA    4M38    4N3W    4N4F    4QUT    4QUU    4QYD    4U9W    4YM5    4YM6    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4YYM    4YYN    4Z2M    4Z5T    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5AY8    5B0Y    5B0Z    5B24    5B2I    5B2J    5B31    5B32    5B33    5B40    5BNV    5BNX    5BO0    5C3I    5CPI    5CPJ    5CPK    5FA5    5FFW    5FWE    5GSE    5GSU    5GT0    5GT3    5GTC    5GXQ    5JA4    5JRG    5KDM    5TEG    5X7X    5XF3    5XF4    5XF5    6BUZ    6C0W   
PDB (IMB)1ZKK    2BQZ    2CV5    2IG0    2KWN    2KWO    2LVM    2QQS    2RJE    2RNY    2RS9    3A6N    3AFA    3AN2    3AV1    3AV2    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3CFS    3CFV    3F9W    3F9X    3F9Y    3F9Z    3IJ1    3JPX    3NQJ    3NQU    3O36    3QBY    3QZS    3QZT    3QZV    3R45    3UVW    3UVX    3UVY    3UW9    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3WTP    3X1S    3X1T    3X1U    3X1V    4GQB    4H9N    4H9O    4H9P    4H9Q    4H9R    4H9S    4HGA    4M38    4N3W    4N4F    4QUT    4QUU    4QYD    4U9W    4YM5    4YM6    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4YYM    4YYN    4Z2M    4Z5T    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5AY8    5B0Y    5B0Z    5B24    5B2I    5B2J    5B31    5B32    5B33    5B40    5BNV    5BNX    5BO0    5C3I    5CPI    5CPJ    5CPK    5FA5    5FFW    5FWE    5GSE    5GSU    5GT0    5GT3    5GTC    5GXQ    5JA4    5JRG    5KDM    5TEG    5X7X    5XF3    5XF4    5XF5    6BUZ    6C0W   
Structural Biology KnowledgeBase1ZKK    2BQZ    2CV5    2IG0    2KWN    2KWO    2LVM    2QQS    2RJE    2RNY    2RS9    3A6N    3AFA    3AN2    3AV1    3AV2    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3CFS    3CFV    3F9W    3F9X    3F9Y    3F9Z    3IJ1    3JPX    3NQJ    3NQU    3O36    3QBY    3QZS    3QZT    3QZV    3R45    3UVW    3UVX    3UVY    3UW9    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3WTP    3X1S    3X1T    3X1U    3X1V    4GQB    4H9N    4H9O    4H9P    4H9Q    4H9R    4H9S    4HGA    4M38    4N3W    4N4F    4QUT    4QUU    4QYD    4U9W    4YM5    4YM6    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4YYM    4YYN    4Z2M    4Z5T    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5AY8    5B0Y    5B0Z    5B24    5B2I    5B2J    5B31    5B32    5B33    5B40    5BNV    5BNX    5BO0    5C3I    5CPI    5CPJ    5CPK    5FA5    5FFW    5FWE    5GSE    5GSU    5GT0    5GT3    5GTC    5GXQ    5JA4    5JRG    5KDM    5TEG    5X7X    5XF3    5XF4    5XF5    6BUZ    6C0W   
SCOP (Structural Classification of Proteins)1ZKK    2BQZ    2CV5    2IG0    2KWN    2KWO    2LVM    2QQS    2RJE    2RNY    2RS9    3A6N    3AFA    3AN2    3AV1    3AV2    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3CFS    3CFV    3F9W    3F9X    3F9Y    3F9Z    3IJ1    3JPX    3NQJ    3NQU    3O36    3QBY    3QZS    3QZT    3QZV    3R45    3UVW    3UVX    3UVY    3UW9    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3WTP    3X1S    3X1T    3X1U    3X1V    4GQB    4H9N    4H9O    4H9P    4H9Q    4H9R    4H9S    4HGA    4M38    4N3W    4N4F    4QUT    4QUU    4QYD    4U9W    4YM5    4YM6    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4YYM    4YYN    4Z2M    4Z5T    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5AY8    5B0Y    5B0Z    5B24    5B2I    5B2J    5B31    5B32    5B33    5B40    5BNV    5BNX    5BO0    5C3I    5CPI    5CPJ    5CPK    5FA5    5FFW    5FWE    5GSE    5GSU    5GT0    5GT3    5GTC    5GXQ    5JA4    5JRG    5KDM    5TEG    5X7X    5XF3    5XF4    5XF5    6BUZ    6C0W   
CATH (Classification of proteins structures)1ZKK    2BQZ    2CV5    2IG0    2KWN    2KWO    2LVM    2QQS    2RJE    2RNY    2RS9    3A6N    3AFA    3AN2    3AV1    3AV2    3AYW    3AZE    3AZF    3AZG    3AZH    3AZI    3AZJ    3AZK    3AZL    3AZM    3AZN    3CFS    3CFV    3F9W    3F9X    3F9Y    3F9Z    3IJ1    3JPX    3NQJ    3NQU    3O36    3QBY    3QZS    3QZT    3QZV    3R45    3UVW    3UVX    3UVY    3UW9    3W96    3W97    3W98    3W99    3WA9    3WAA    3WKJ    3WTP    3X1S    3X1T    3X1U    3X1V    4GQB    4H9N    4H9O    4H9P    4H9Q    4H9R    4H9S    4HGA    4M38    4N3W    4N4F    4QUT    4QUU    4QYD    4U9W    4YM5    4YM6    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4YYM    4YYN    4Z2M    4Z5T    5AV5    5AV6    5AV8    5AV9    5AVB    5AVC    5AY8    5B0Y    5B0Z    5B24    5B2I    5B2J    5B31    5B32    5B33    5B40    5BNV    5BNX    5BO0    5C3I    5CPI    5CPJ    5CPK    5FA5    5FFW    5FWE    5GSE    5GSU    5GT0    5GT3    5GTC    5GXQ    5JA4    5JRG    5KDM    5TEG    5X7X    5XF3    5XF4    5XF5    6BUZ    6C0W   
SuperfamilyP62805
Human Protein Atlas [tissue]ENSG00000275126-H4C13 [tissue]
Peptide AtlasP62805
Protein Interaction databases
DIP (DOE-UCLA)P62805
IntAct (EBI)P62805
FunCoupENSG00000275126
BioGRIDH4C13
STRING (EMBL)H4C13
ZODIACH4C13
Ontologies - Pathways
QuickGOP62805
Ontology : AmiGOchromatin silencing at rDNA  nuclear chromosome  nuclear chromosome, telomeric region  nucleosome  nucleosome  nuclear nucleosome  DNA binding  DNA binding  RNA binding  protein binding  extracellular region  nucleus  nucleus  nucleoplasm  double-strand break repair via nonhomologous end joining  nucleosome assembly  nucleosome assembly  DNA replication-dependent nucleosome assembly  DNA replication-independent nucleosome assembly  DNA-templated transcription, initiation  membrane  telomere capping  protein domain specific binding  telomere organization  protein-containing complex  CENP-A containing nucleosome assembly  cellular protein metabolic process  regulation of megakaryocyte differentiation  negative regulation of megakaryocyte differentiation  negative regulation of gene expression, epigenetic  protein heterodimerization activity  protein heterotetramerization  regulation of gene silencing by miRNA  extracellular exosome  
Ontology : EGO-EBIchromatin silencing at rDNA  nuclear chromosome  nuclear chromosome, telomeric region  nucleosome  nucleosome  nuclear nucleosome  DNA binding  DNA binding  RNA binding  protein binding  extracellular region  nucleus  nucleus  nucleoplasm  double-strand break repair via nonhomologous end joining  nucleosome assembly  nucleosome assembly  DNA replication-dependent nucleosome assembly  DNA replication-independent nucleosome assembly  DNA-templated transcription, initiation  membrane  telomere capping  protein domain specific binding  telomere organization  protein-containing complex  CENP-A containing nucleosome assembly  cellular protein metabolic process  regulation of megakaryocyte differentiation  negative regulation of megakaryocyte differentiation  negative regulation of gene expression, epigenetic  protein heterodimerization activity  protein heterotetramerization  regulation of gene silencing by miRNA  extracellular exosome  
NDEx NetworkH4C13
Atlas of Cancer Signalling NetworkH4C13
Wikipedia pathwaysH4C13
Orthology - Evolution
OrthoDB8368
GeneTree (enSembl)ENSG00000275126
Phylogenetic Trees/Animal Genes : TreeFamH4C13
HOGENOMP62805
Homologs : HomoloGeneH4C13
Homology/Alignments : Family Browser (UCSC)H4C13
Gene fusions - Rearrangements
Fusion : QuiverH4C13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerH4C13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)H4C13
dbVarH4C13
ClinVarH4C13
1000_GenomesH4C13 
Exome Variant ServerH4C13
ExAC (Exome Aggregation Consortium)ENSG00000275126
GNOMAD BrowserENSG00000275126
Varsome BrowserH4C13
Genetic variants : HAPMAP8368
Genomic Variants (DGV)H4C13 [DGVbeta]
DECIPHERH4C13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisH4C13 
Mutations
ICGC Data PortalH4C13 
TCGA Data PortalH4C13 
Broad Tumor PortalH4C13
OASIS PortalH4C13 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDH4C13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch H4C13
DgiDB (Drug Gene Interaction Database)H4C13
DoCM (Curated mutations)H4C13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)H4C13 (select a term)
intoGenH4C13
Cancer3DH4C13(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602831   
Orphanet
DisGeNETH4C13
MedgenH4C13
Genetic Testing Registry H4C13
NextProtP62805 [Medical]
TSGene8368
GENETestsH4C13
Target ValidationH4C13
Huge Navigator H4C13 [HugePedia]
snp3D : Map Gene to Disease8368
BioCentury BCIQH4C13
ClinGenH4C13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8368
Chemical/Pharm GKB GenePA29166
Clinical trialH4C13
Miscellaneous
canSAR (ICR)H4C13 (select the gene name)
DataMed IndexH4C13
Probes
Litterature
PubMed99 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineH4C13
EVEXH4C13
GoPubMedH4C13
iHOPH4C13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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