Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HAAO (3-hydroxyanthranilate 3,4-dioxygenase)

Identity

Other alias3-HAO
HAO
HGNC (Hugo) HAAO
LocusID (NCBI) 23498
Atlas_Id 51229
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 42994229 and ends at 43019751 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HAAO (2p21) / AP3D1 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HAAO   4796
Cards
Entrez_Gene (NCBI)HAAO  23498  3-hydroxyanthranilate 3,4-dioxygenase
Aliases3-HAO; HAO
GeneCards (Weizmann)HAAO
Ensembl hg19 (Hinxton)ENSG00000162882 [Gene_View]  chr2:42994229-43019751 [Contig_View]  HAAO [Vega]
Ensembl hg38 (Hinxton)ENSG00000162882 [Gene_View]  chr2:42994229-43019751 [Contig_View]  HAAO [Vega]
ICGC DataPortalENSG00000162882
TCGA cBioPortalHAAO
AceView (NCBI)HAAO
Genatlas (Paris)HAAO
WikiGenes23498
SOURCE (Princeton)HAAO
Genetics Home Reference (NIH)HAAO
Genomic and cartography
GoldenPath hg19 (UCSC)HAAO  -     chr2:42994229-43019751 -  2p21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HAAO  -     2p21   [Description]    (hg38-Dec_2013)
EnsemblHAAO - 2p21 [CytoView hg19]  HAAO - 2p21 [CytoView hg38]
Mapping of homologs : NCBIHAAO [Mapview hg19]  HAAO [Mapview hg38]
OMIM604521   
Gene and transcription
Genbank (Entrez)AK295693 BC029510 BI602406 CB850657 CR457063
RefSeq transcript (Entrez)NM_012205
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)HAAO
Cluster EST : UnigeneHs.368805 [ NCBI ]
CGAP (NCI)Hs.368805
Alternative Splicing GalleryENSG00000162882
Gene ExpressionHAAO [ NCBI-GEO ]   HAAO [ EBI - ARRAY_EXPRESS ]   HAAO [ SEEK ]   HAAO [ MEM ]
Gene Expression Viewer (FireBrowse)HAAO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23498
GTEX Portal (Tissue expression)HAAO
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46952   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP46952  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP46952
Splice isoforms : SwissVarP46952
PhosPhoSitePlusP46952
Domains : Interpro (EBI)3hydroanth_dOase    3hydroanth_dOase_met    RmlC-like_jellyroll    RmlC_Cupin   
Domain families : Pfam (Sanger)3-HAO (PF06052)   
Domain families : Pfam (NCBI)pfam06052   
Conserved Domain (NCBI)HAAO
DMDM Disease mutations23498
Blocks (Seattle)HAAO
PDB (SRS)2QNK   
PDB (PDBSum)2QNK   
PDB (IMB)2QNK   
PDB (RSDB)2QNK   
Structural Biology KnowledgeBase2QNK   
SCOP (Structural Classification of Proteins)2QNK   
CATH (Classification of proteins structures)2QNK   
SuperfamilyP46952
Human Protein AtlasENSG00000162882
Peptide AtlasP46952
HPRD05158
IPIIPI00009375   IPI00921062   IPI00894425   
Protein Interaction databases
DIP (DOE-UCLA)P46952
IntAct (EBI)P46952
FunCoupENSG00000162882
BioGRIDHAAO
STRING (EMBL)HAAO
ZODIACHAAO
Ontologies - Pathways
QuickGOP46952
Ontology : AmiGO3-hydroxyanthranilate 3,4-dioxygenase activity  3-hydroxyanthranilate 3,4-dioxygenase activity  protein binding  cytosol  cytosol  tryptophan catabolic process  ferrous iron binding  electron carrier activity  response to zinc ion  quinolinate biosynthetic process  'de novo' NAD biosynthetic process from tryptophan  anthranilate metabolic process  response to cadmium ion  quinolinate metabolic process  oxidation-reduction process  neuron cellular homeostasis  extracellular exosome  
Ontology : EGO-EBI3-hydroxyanthranilate 3,4-dioxygenase activity  3-hydroxyanthranilate 3,4-dioxygenase activity  protein binding  cytosol  cytosol  tryptophan catabolic process  ferrous iron binding  electron carrier activity  response to zinc ion  quinolinate biosynthetic process  'de novo' NAD biosynthetic process from tryptophan  anthranilate metabolic process  response to cadmium ion  quinolinate metabolic process  oxidation-reduction process  neuron cellular homeostasis  extracellular exosome  
Pathways : KEGGTryptophan metabolism   
NDEx NetworkHAAO
Atlas of Cancer Signalling NetworkHAAO
Wikipedia pathwaysHAAO
Orthology - Evolution
OrthoDB23498
GeneTree (enSembl)ENSG00000162882
Phylogenetic Trees/Animal Genes : TreeFamHAAO
HOVERGENP46952
HOGENOMP46952
Homologs : HomoloGeneHAAO
Homology/Alignments : Family Browser (UCSC)HAAO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHAAO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HAAO
dbVarHAAO
ClinVarHAAO
1000_GenomesHAAO 
Exome Variant ServerHAAO
ExAC (Exome Aggregation Consortium)HAAO (select the gene name)
Genetic variants : HAPMAP23498
Genomic Variants (DGV)HAAO [DGVbeta]
DECIPHER (Syndromes)2:42994229-43019751  ENSG00000162882
CONAN: Copy Number AnalysisHAAO 
Mutations
ICGC Data PortalHAAO 
TCGA Data PortalHAAO 
Broad Tumor PortalHAAO
OASIS PortalHAAO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHAAO  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHAAO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HAAO
DgiDB (Drug Gene Interaction Database)HAAO
DoCM (Curated mutations)HAAO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HAAO (select a term)
intoGenHAAO
Cancer3DHAAO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604521   
Orphanet
MedgenHAAO
Genetic Testing Registry HAAO
NextProtP46952 [Medical]
TSGene23498
GENETestsHAAO
Huge Navigator HAAO [HugePedia]
snp3D : Map Gene to Disease23498
BioCentury BCIQHAAO
ClinGenHAAO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23498
Chemical/Pharm GKB GenePA29171
Clinical trialHAAO
Miscellaneous
canSAR (ICR)HAAO (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHAAO
EVEXHAAO
GoPubMedHAAO
iHOPHAAO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:08:31 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.