Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HABP2 (hyaluronan binding protein 2)

Identity

Alias (NCBI)FSAP
HABP
HGFAL
NMTC5
PHBP
HGNC (Hugo) HABP2
HGNC Alias symbHABP
PHBP
HGFAL
FSAP
HGNC Alias nameplasma hyaluronan binding protein
 factor VII activating protein
HGNC Previous namehyaluronan-binding protein 2
LocusID (NCBI) 3026
Atlas_Id 55332
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 113553053 and ends at 113589601 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)HABP2   4798
Cards
Entrez_Gene (NCBI)HABP2    hyaluronan binding protein 2
AliasesFSAP; HABP; HGFAL; NMTC5; 
PHBP
GeneCards (Weizmann)HABP2
Ensembl hg19 (Hinxton)ENSG00000148702 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148702 [Gene_View]  ENSG00000148702 [Sequence]  chr10:113553053-113589601 [Contig_View]  HABP2 [Vega]
ICGC DataPortalENSG00000148702
TCGA cBioPortalHABP2
AceView (NCBI)HABP2
Genatlas (Paris)HABP2
SOURCE (Princeton)HABP2
Genetics Home Reference (NIH)HABP2
Genomic and cartography
GoldenPath hg38 (UCSC)HABP2  -     chr10:113553053-113589601 +  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HABP2  -     10q25.3   [Description]    (hg19-Feb_2009)
GoldenPathHABP2 - 10q25.3 [CytoView hg19]  HABP2 - 10q25.3 [CytoView hg38]
ImmunoBaseENSG00000148702
Genome Data Viewer NCBIHABP2 [Mapview hg19]  
OMIM188050   603924   616535   
Gene and transcription
Genbank (Entrez)AA484932 AI373912 AK290832 AK303759 AK303761
RefSeq transcript (Entrez)NM_001177660 NM_004132
Consensus coding sequences : CCDS (NCBI)HABP2
Gene ExpressionHABP2 [ NCBI-GEO ]   HABP2 [ EBI - ARRAY_EXPRESS ]   HABP2 [ SEEK ]   HABP2 [ MEM ]
Gene Expression Viewer (FireBrowse)HABP2 [ Firebrowse - Broad ]
GenevisibleExpression of HABP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3026
GTEX Portal (Tissue expression)HABP2
Human Protein AtlasENSG00000148702-HABP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14520   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14520  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14520
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ14520
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    KRINGLE_1 (PS00021)    KRINGLE_2 (PS50070)    TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)EGF-like_Ca-bd_dom    EGF-like_dom    Kringle    Kringle-like    Kringle_CS    Kringle_sf    Peptidase_S1_PA    Peptidase_S1_PA_chymotrypsin    Peptidase_S1A    Trypsin_dom    TRYPSIN_HIS    TRYPSIN_SER   
Domain families : Pfam (Sanger)EGF (PF00008)    Kringle (PF00051)    Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00008    pfam00051    pfam00089   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_CA (SM00179)  KR (SM00130)  Tryp_SPc (SM00020)  
Conserved Domain (NCBI)HABP2
SuperfamilyQ14520
AlphaFold pdb e-kbQ14520   
Human Protein Atlas [tissue]ENSG00000148702-HABP2 [tissue]
HPRD04890
Protein Interaction databases
DIP (DOE-UCLA)Q14520
IntAct (EBI)Q14520
BioGRIDHABP2
STRING (EMBL)HABP2
ZODIACHABP2
Ontologies - Pathways
QuickGOQ14520
Ontology : AmiGOserine-type endopeptidase activity  calcium ion binding  glycosaminoglycan binding  extracellular region  extracellular space  proteolysis  proteolysis  cell adhesion  peptidase activity  
Ontology : EGO-EBIserine-type endopeptidase activity  calcium ion binding  glycosaminoglycan binding  extracellular region  extracellular space  proteolysis  proteolysis  cell adhesion  peptidase activity  
NDEx NetworkHABP2
Atlas of Cancer Signalling NetworkHABP2
Wikipedia pathwaysHABP2
Orthology - Evolution
OrthoDB3026
GeneTree (enSembl)ENSG00000148702
Phylogenetic Trees/Animal Genes : TreeFamHABP2
Homologs : HomoloGeneHABP2
Homology/Alignments : Family Browser (UCSC)HABP2
Gene fusions - Rearrangements
Fusion : QuiverHABP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHABP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HABP2
dbVarHABP2
ClinVarHABP2
MonarchHABP2
1000_GenomesHABP2 
Exome Variant ServerHABP2
GNOMAD BrowserENSG00000148702
Varsome BrowserHABP2
ACMGHABP2 variants
VarityQ14520
Genomic Variants (DGV)HABP2 [DGVbeta]
DECIPHERHABP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHABP2 
Mutations
ICGC Data PortalHABP2 
TCGA Data PortalHABP2 
Broad Tumor PortalHABP2
OASIS PortalHABP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHABP2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHABP2
Mutations and Diseases : HGMDHABP2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaHABP2
DgiDB (Drug Gene Interaction Database)HABP2
DoCM (Curated mutations)HABP2
CIViC (Clinical Interpretations of Variants in Cancer)HABP2
Cancer3DHABP2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM188050    603924    616535   
Orphanet21661   
DisGeNETHABP2
MedgenHABP2
Genetic Testing Registry HABP2
NextProtQ14520 [Medical]
GENETestsHABP2
Target ValidationHABP2
Huge Navigator HABP2 [HugePedia]
ClinGenHABP2
Clinical trials, drugs, therapy
MyCancerGenomeHABP2
Protein Interactions : CTDHABP2
Pharm GKB GenePA29172
PharosQ14520
Clinical trialHABP2
Miscellaneous
canSAR (ICR)HABP2
HarmonizomeHABP2
DataMed IndexHABP2
Probes
Litterature
PubMed94 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHABP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:11:58 CEST 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.