Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HABP4 (hyaluronan binding protein 4)

Identity

Alias_symbol (synonym)IHABP4
SERBP1L
Other aliasIHABP-4
Ki-1/57
HGNC (Hugo) HABP4
LocusID (NCBI) 22927
Atlas_Id 52360
Location 9q22.32  [Link to chromosome band 9q22]
Location_base_pair Starts at 96450155 and ends at 96491336 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKRD11 (16q24.3) / HABP4 (9q22.32)KMT2A (11q23.3) / HABP4 (9q22.32)ZDHHC9 (Xq26.1) / HABP4 (9q22.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HABP4   17062
Cards
Entrez_Gene (NCBI)HABP4  22927  hyaluronan binding protein 4
AliasesIHABP-4; IHABP4; Ki-1/57; SERBP1L
GeneCards (Weizmann)HABP4
Ensembl hg19 (Hinxton)ENSG00000130956 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130956 [Gene_View]  chr9:96450155-96491336 [Contig_View]  HABP4 [Vega]
ICGC DataPortalENSG00000130956
TCGA cBioPortalHABP4
AceView (NCBI)HABP4
Genatlas (Paris)HABP4
WikiGenes22927
SOURCE (Princeton)HABP4
Genetics Home Reference (NIH)HABP4
Genomic and cartography
GoldenPath hg38 (UCSC)HABP4  -     chr9:96450155-96491336 +  9q22.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HABP4  -     9q22.32   [Description]    (hg19-Feb_2009)
EnsemblHABP4 - 9q22.32 [CytoView hg19]  HABP4 - 9q22.32 [CytoView hg38]
Mapping of homologs : NCBIHABP4 [Mapview hg19]  HABP4 [Mapview hg38]
OMIM617369   
Gene and transcription
Genbank (Entrez)AA593631 AF241831 AK000610 AK025144 AK055161
RefSeq transcript (Entrez)NM_014282
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HABP4
Cluster EST : UnigeneHs.494567 [ NCBI ]
CGAP (NCI)Hs.494567
Alternative Splicing GalleryENSG00000130956
Gene ExpressionHABP4 [ NCBI-GEO ]   HABP4 [ EBI - ARRAY_EXPRESS ]   HABP4 [ SEEK ]   HABP4 [ MEM ]
Gene Expression Viewer (FireBrowse)HABP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22927
GTEX Portal (Tissue expression)HABP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JVS0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JVS0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JVS0
Splice isoforms : SwissVarQ5JVS0
PhosPhoSitePlusQ5JVS0
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    IHABP4_N   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    IHABP4_N (PF16174)   
Domain families : Pfam (NCBI)pfam04774    pfam16174   
Domain families : Smart (EMBL)HABP4_PAI-RBP1 (SM01233)  
Conserved Domain (NCBI)HABP4
DMDM Disease mutations22927
Blocks (Seattle)HABP4
SuperfamilyQ5JVS0
Human Protein AtlasENSG00000130956
Peptide AtlasQ5JVS0
HPRD13628
IPIIPI00018583   IPI00103004   
Protein Interaction databases
DIP (DOE-UCLA)Q5JVS0
IntAct (EBI)Q5JVS0
FunCoupENSG00000130956
BioGRIDHABP4
STRING (EMBL)HABP4
ZODIACHABP4
Ontologies - Pathways
QuickGOQ5JVS0
Ontology : AmiGOplatelet degranulation  protein binding  extracellular region  nucleus  nucleoplasm  cytoplasm  cytosol  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  sarcomere  negative regulation of DNA binding  cellular response to mechanical stimulus  
Ontology : EGO-EBIplatelet degranulation  protein binding  extracellular region  nucleus  nucleoplasm  cytoplasm  cytosol  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  sarcomere  negative regulation of DNA binding  cellular response to mechanical stimulus  
NDEx NetworkHABP4
Atlas of Cancer Signalling NetworkHABP4
Wikipedia pathwaysHABP4
Orthology - Evolution
OrthoDB22927
GeneTree (enSembl)ENSG00000130956
Phylogenetic Trees/Animal Genes : TreeFamHABP4
HOVERGENQ5JVS0
HOGENOMQ5JVS0
Homologs : HomoloGeneHABP4
Homology/Alignments : Family Browser (UCSC)HABP4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHABP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HABP4
dbVarHABP4
ClinVarHABP4
1000_GenomesHABP4 
Exome Variant ServerHABP4
ExAC (Exome Aggregation Consortium)HABP4 (select the gene name)
Genetic variants : HAPMAP22927
Genomic Variants (DGV)HABP4 [DGVbeta]
DECIPHERHABP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHABP4 
Mutations
ICGC Data PortalHABP4 
TCGA Data PortalHABP4 
Broad Tumor PortalHABP4
OASIS PortalHABP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHABP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHABP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HABP4
DgiDB (Drug Gene Interaction Database)HABP4
DoCM (Curated mutations)HABP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HABP4 (select a term)
intoGenHABP4
Cancer3DHABP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617369   
Orphanet
MedgenHABP4
Genetic Testing Registry HABP4
NextProtQ5JVS0 [Medical]
TSGene22927
GENETestsHABP4
Target ValidationHABP4
Huge Navigator HABP4 [HugePedia]
snp3D : Map Gene to Disease22927
BioCentury BCIQHABP4
ClinGenHABP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22927
Chemical/Pharm GKB GenePA38434
Clinical trialHABP4
Miscellaneous
canSAR (ICR)HABP4 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHABP4
EVEXHABP4
GoPubMedHABP4
iHOPHABP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:10:59 CEST 2017

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