Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HACD1 (3-hydroxyacyl-CoA dehydratase 1)

Identity

Alias_namesPTPLA
protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a
protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A
Alias_symbol (synonym)CAP
Other alias
HGNC (Hugo) HACD1
LocusID (NCBI) 9200
Atlas_Id 46754
Location 10p12.33  [Link to chromosome band 10p12]
Location_base_pair Starts at 17631958 and ends at 17659373 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)HACD1   9639
Cards
Entrez_Gene (NCBI)HACD1  9200  3-hydroxyacyl-CoA dehydratase 1
AliasesCAP; PTPLA
GeneCards (Weizmann)HACD1
Ensembl hg19 (Hinxton)ENSG00000165996 [Gene_View]  chr10:17631958-17659373 [Contig_View]  HACD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165996 [Gene_View]  chr10:17631958-17659373 [Contig_View]  HACD1 [Vega]
ICGC DataPortalENSG00000165996
TCGA cBioPortalHACD1
AceView (NCBI)HACD1
Genatlas (Paris)HACD1
WikiGenes9200
SOURCE (Princeton)HACD1
Genetics Home Reference (NIH)HACD1
Genomic and cartography
GoldenPath hg19 (UCSC)HACD1  -     chr10:17631958-17659373 -  10p12.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HACD1  -     10p12.33   [Description]    (hg38-Dec_2013)
EnsemblHACD1 - 10p12.33 [CytoView hg19]  HACD1 - 10p12.33 [CytoView hg38]
Mapping of homologs : NCBIHACD1 [Mapview hg19]  HACD1 [Mapview hg38]
OMIM610467   
Gene and transcription
Genbank (Entrez)AF114494 AW022173 AY455942 BC010353 BC027709
RefSeq transcript (Entrez)NM_014241
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_041789 NT_008705 NW_004929370
Consensus coding sequences : CCDS (NCBI)HACD1
Cluster EST : UnigeneHs.114062 [ NCBI ]
CGAP (NCI)Hs.114062
Alternative Splicing GalleryENSG00000165996
Gene ExpressionHACD1 [ NCBI-GEO ]   HACD1 [ EBI - ARRAY_EXPRESS ]   HACD1 [ SEEK ]   HACD1 [ MEM ]
Gene Expression Viewer (FireBrowse)HACD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)9200
GTEX Portal (Tissue expression)HACD1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HACD1
DMDM Disease mutations9200
Blocks (Seattle)HACD1
Human Protein AtlasENSG00000165996
HPRD10175
IPIIPI00307235   IPI00426084   IPI00295804   
Protein Interaction databases
FunCoupENSG00000165996
BioGRIDHACD1
STRING (EMBL)HACD1
ZODIACHACD1
Ontologies - Pathways
Huge Navigator HACD1 [HugePedia]
snp3D : Map Gene to Disease9200
BioCentury BCIQHACD1
ClinGenHACD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9200
Chemical/Pharm GKB GenePA33982
Clinical trialHACD1
Miscellaneous
canSAR (ICR)HACD1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHACD1
EVEXHACD1
GoPubMedHACD1
iHOPHACD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:03:20 CEST 2017

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