Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HAGHL (hydroxyacylglutathione hydrolase-like)

Identity

Alias_nameshydroxyacyl glutathione hydrolase-like
Alias_symbol (synonym)MGC2605
Other alias-
HGNC (Hugo) HAGHL
LocusID (NCBI) 84264
Atlas_Id 64161
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 726936 and ends at 729715 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HAGHL (16p13.3) / DHX38 (16q22.2)HAGHL (16p13.3) / SLC38A10 (17q25.3)SLC38A10 (17q25.3) / HAGHL (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HAGHL   14177
Cards
Entrez_Gene (NCBI)HAGHL  84264  hydroxyacylglutathione hydrolase-like
Aliases
GeneCards (Weizmann)HAGHL
Ensembl hg19 (Hinxton)ENSG00000103253 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103253 [Gene_View]  chr16:726936-729715 [Contig_View]  HAGHL [Vega]
ICGC DataPortalENSG00000103253
TCGA cBioPortalHAGHL
AceView (NCBI)HAGHL
Genatlas (Paris)HAGHL
WikiGenes84264
SOURCE (Princeton)HAGHL
Genetics Home Reference (NIH)HAGHL
Genomic and cartography
GoldenPath hg38 (UCSC)HAGHL  -     chr16:726936-729715 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HAGHL  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblHAGHL - 16p13.3 [CytoView hg19]  HAGHL - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIHAGHL [Mapview hg19]  HAGHL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA489499 AB209331 AK054841 AK098340 AK293575
RefSeq transcript (Entrez)NM_001290137 NM_001290139 NM_001323635 NM_001323636 NM_032304 NM_207112
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HAGHL
Cluster EST : UnigeneHs.124015 [ NCBI ]
CGAP (NCI)Hs.124015
Alternative Splicing GalleryENSG00000103253
Gene ExpressionHAGHL [ NCBI-GEO ]   HAGHL [ EBI - ARRAY_EXPRESS ]   HAGHL [ SEEK ]   HAGHL [ MEM ]
Gene Expression Viewer (FireBrowse)HAGHL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84264
GTEX Portal (Tissue expression)HAGHL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PII5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PII5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PII5
Splice isoforms : SwissVarQ6PII5
PhosPhoSitePlusQ6PII5
Domains : Interpro (EBI)Metallo-B-lactamas   
Domain families : Pfam (Sanger)Lactamase_B (PF00753)   
Domain families : Pfam (NCBI)pfam00753   
Domain families : Smart (EMBL)Lactamase_B (SM00849)  
Conserved Domain (NCBI)HAGHL
DMDM Disease mutations84264
Blocks (Seattle)HAGHL
SuperfamilyQ6PII5
Human Protein AtlasENSG00000103253
Peptide AtlasQ6PII5
HPRD17087
IPIIPI00410184   IPI00329667   IPI00382519   IPI00386405   
Protein Interaction databases
DIP (DOE-UCLA)Q6PII5
IntAct (EBI)Q6PII5
FunCoupENSG00000103253
BioGRIDHAGHL
STRING (EMBL)HAGHL
ZODIACHAGHL
Ontologies - Pathways
QuickGOQ6PII5
Ontology : AmiGOhydrolase activity  metal ion binding  
Ontology : EGO-EBIhydrolase activity  metal ion binding  
Pathways : KEGGPyruvate metabolism   
NDEx NetworkHAGHL
Atlas of Cancer Signalling NetworkHAGHL
Wikipedia pathwaysHAGHL
Orthology - Evolution
OrthoDB84264
GeneTree (enSembl)ENSG00000103253
Phylogenetic Trees/Animal Genes : TreeFamHAGHL
HOVERGENQ6PII5
HOGENOMQ6PII5
Homologs : HomoloGeneHAGHL
Homology/Alignments : Family Browser (UCSC)HAGHL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHAGHL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HAGHL
dbVarHAGHL
ClinVarHAGHL
1000_GenomesHAGHL 
Exome Variant ServerHAGHL
ExAC (Exome Aggregation Consortium)HAGHL (select the gene name)
Genetic variants : HAPMAP84264
Genomic Variants (DGV)HAGHL [DGVbeta]
DECIPHERHAGHL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHAGHL 
Mutations
ICGC Data PortalHAGHL 
TCGA Data PortalHAGHL 
Broad Tumor PortalHAGHL
OASIS PortalHAGHL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHAGHL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHAGHL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HAGHL
DgiDB (Drug Gene Interaction Database)HAGHL
DoCM (Curated mutations)HAGHL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HAGHL (select a term)
intoGenHAGHL
Cancer3DHAGHL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHAGHL
Genetic Testing Registry HAGHL
NextProtQ6PII5 [Medical]
TSGene84264
GENETestsHAGHL
Target ValidationHAGHL
Huge Navigator HAGHL [HugePedia]
snp3D : Map Gene to Disease84264
BioCentury BCIQHAGHL
ClinGenHAGHL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84264
Chemical/Pharm GKB GenePA29180
Clinical trialHAGHL
Miscellaneous
canSAR (ICR)HAGHL (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHAGHL
EVEXHAGHL
GoPubMedHAGHL
iHOPHAGHL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:13 CEST 2017

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