Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HAGLR (HOXD antisense growth-associated long non-coding RNA)

Identity

Alias (NCBI)HOXD-AS1
MIR7704HG
Mdgt
HGNC (Hugo) HAGLR
HGNC Alias symbMdgt
MIR7704HG
HGNC Alias nameMIR7704 host gene
HGNC Previous nameHOXD-AS1
HGNC Previous nameHOXD cluster antisense RNA 1 (non-protein coding)
 HOXD cluster antisense RNA 1
LocusID (NCBI) 401022
Atlas_Id 57019
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 176173189 and ends at 176178129 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)HAGLR   43755
Cards
Entrez_Gene (NCBI)HAGLR  401022  HOXD antisense growth-associated long non-coding RNA
AliasesHOXD-AS1; MIR7704HG; Mdgt
GeneCards (Weizmann)HAGLR
Ensembl hg19 (Hinxton)ENSG00000224189 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224189 [Gene_View]  ENSG00000224189 [Sequence]  chr2:176173189-176178129 [Contig_View]  HAGLR [Vega]
ICGC DataPortalENSG00000224189
TCGA cBioPortalHAGLR
AceView (NCBI)HAGLR
Genatlas (Paris)HAGLR
WikiGenes401022
SOURCE (Princeton)HAGLR
Genetics Home Reference (NIH)HAGLR
Genomic and cartography
GoldenPath hg38 (UCSC)HAGLR  -     chr2:176173189-176178129 -  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HAGLR  -     2q31.1   [Description]    (hg19-Feb_2009)
GoldenPathHAGLR - 2q31.1 [CytoView hg19]  HAGLR - 2q31.1 [CytoView hg38]
ImmunoBaseENSG00000224189
genome Data Viewer NCBIHAGLR [Mapview hg19]  
OMIM618209   
Gene and transcription
Genbank (Entrez)BC030713 BC047481 BG721643 CB153479 DA326484
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HAGLR
Alternative Splicing GalleryENSG00000224189
Gene ExpressionHAGLR [ NCBI-GEO ]   HAGLR [ EBI - ARRAY_EXPRESS ]   HAGLR [ SEEK ]   HAGLR [ MEM ]
Gene Expression Viewer (FireBrowse)HAGLR [ Firebrowse - Broad ]
GenevisibleExpression of HAGLR in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401022
GTEX Portal (Tissue expression)HAGLR
Human Protein AtlasENSG00000224189-HAGLR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HAGLR
DMDM Disease mutations401022
Blocks (Seattle)HAGLR
Human Protein Atlas [tissue]ENSG00000224189-HAGLR [tissue]
IPIIPI00955966   
Protein Interaction databases
FunCoupENSG00000224189
BioGRIDHAGLR
STRING (EMBL)HAGLR
ZODIACHAGLR
Ontologies - Pathways
Huge Navigator HAGLR [HugePedia]
snp3D : Map Gene to Disease401022
BioCentury BCIQHAGLR
ClinGenHAGLR
Clinical trials, drugs, therapy
Protein Interactions : CTD401022
Clinical trialHAGLR
Miscellaneous
canSAR (ICR)HAGLR (select the gene name)
HarmonizomeHAGLR
DataMed IndexHAGLR
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHAGLR
EVEXHAGLR
GoPubMedHAGLR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:13:55 CEST 2020

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