Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HAGLR (HOXD antisense growth-associated long non-coding RNA)

Identity

Alias_namesHOXD-AS1
HOXD cluster antisense RNA 1 (non-protein coding)
HOXD cluster antisense RNA 1
Alias_symbol (synonym)Mdgt
Other alias
HGNC (Hugo) HAGLR
LocusID (NCBI) 401022
Atlas_Id 64162
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 176173189 and ends at 176188958 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HAGLR   43755
Cards
Entrez_Gene (NCBI)HAGLR  401022  HOXD antisense growth-associated long non-coding RNA
AliasesHOXD-AS1; Mdgt
GeneCards (Weizmann)HAGLR
Ensembl hg19 (Hinxton)ENSG00000224189 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224189 [Gene_View]  chr2:176173189-176188958 [Contig_View]  HAGLR [Vega]
ICGC DataPortalENSG00000224189
TCGA cBioPortalHAGLR
AceView (NCBI)HAGLR
Genatlas (Paris)HAGLR
WikiGenes401022
SOURCE (Princeton)HAGLR
Genetics Home Reference (NIH)HAGLR
Genomic and cartography
GoldenPath hg38 (UCSC)HAGLR  -     chr2:176173189-176188958 -  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HAGLR  -     2q31.1   [Description]    (hg19-Feb_2009)
EnsemblHAGLR - 2q31.1 [CytoView hg19]  HAGLR - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBIHAGLR [Mapview hg19]  HAGLR [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030713 BC047481 BG721643 CB153479 DA326484
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HAGLR
Cluster EST : UnigeneHs.98661 [ NCBI ]
CGAP (NCI)Hs.98661
Alternative Splicing GalleryENSG00000224189
Gene ExpressionHAGLR [ NCBI-GEO ]   HAGLR [ EBI - ARRAY_EXPRESS ]   HAGLR [ SEEK ]   HAGLR [ MEM ]
Gene Expression Viewer (FireBrowse)HAGLR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401022
GTEX Portal (Tissue expression)HAGLR
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HAGLR
DMDM Disease mutations401022
Blocks (Seattle)HAGLR
Human Protein AtlasENSG00000224189
IPIIPI00955966   
Protein Interaction databases
FunCoupENSG00000224189
BioGRIDHAGLR
STRING (EMBL)HAGLR
ZODIACHAGLR
Ontologies - Pathways
Huge Navigator HAGLR [HugePedia]
snp3D : Map Gene to Disease401022
BioCentury BCIQHAGLR
ClinGenHAGLR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401022
Clinical trialHAGLR
Miscellaneous
canSAR (ICR)HAGLR (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHAGLR
EVEXHAGLR
GoPubMedHAGLR
iHOPHAGLR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:51:57 CEST 2017

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