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HAL (histidine ammonia-lyase)

Identity

Alias_namesHIS
Other aliasHSTD
HGNC (Hugo) HAL
LocusID (NCBI) 3034
Atlas_Id 64164
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 95972662 and ends at 95996365 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HAL   4806
Cards
Entrez_Gene (NCBI)HAL  3034  histidine ammonia-lyase
AliasesHIS; HSTD
GeneCards (Weizmann)HAL
Ensembl hg19 (Hinxton)ENSG00000084110 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000084110 [Gene_View]  chr12:95972662-95996365 [Contig_View]  HAL [Vega]
ICGC DataPortalENSG00000084110
TCGA cBioPortalHAL
AceView (NCBI)HAL
Genatlas (Paris)HAL
WikiGenes3034
SOURCE (Princeton)HAL
Genetics Home Reference (NIH)HAL
Genomic and cartography
GoldenPath hg38 (UCSC)HAL  -     chr12:95972662-95996365 -  12q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HAL  -     12q23.1   [Description]    (hg19-Feb_2009)
EnsemblHAL - 12q23.1 [CytoView hg19]  HAL - 12q23.1 [CytoView hg38]
Mapping of homologs : NCBIHAL [Mapview hg19]  HAL [Mapview hg38]
OMIM235800   609457   
Gene and transcription
Genbank (Entrez)AI248003 AK297004 AK298736 AK303544 AL596896
RefSeq transcript (Entrez)NM_001258333 NM_001258334 NM_002108
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HAL
Cluster EST : UnigeneHs.742210 [ NCBI ]
CGAP (NCI)Hs.742210
Alternative Splicing GalleryENSG00000084110
Gene ExpressionHAL [ NCBI-GEO ]   HAL [ EBI - ARRAY_EXPRESS ]   HAL [ SEEK ]   HAL [ MEM ]
Gene Expression Viewer (FireBrowse)HAL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3034
GTEX Portal (Tissue expression)HAL
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42357   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP42357  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP42357
Splice isoforms : SwissVarP42357
PhosPhoSitePlusP42357
Domaine pattern : Prosite (Expaxy)PAL_HISTIDASE (PS00488)   
Domains : Interpro (EBI)Aromatic_Lyase    Fumarase/histidase_N    HutH    L-Aspartase-like    Phe/His_NH3-lyase_AS   
Domain families : Pfam (Sanger)Lyase_aromatic (PF00221)   
Domain families : Pfam (NCBI)pfam00221   
Conserved Domain (NCBI)HAL
DMDM Disease mutations3034
Blocks (Seattle)HAL
SuperfamilyP42357
Human Protein AtlasENSG00000084110
Peptide AtlasP42357
HPRD07187
IPIIPI00031425   IPI01015439   IPI01012806   IPI01013478   IPI01022452   IPI01022158   IPI01021988   
Protein Interaction databases
DIP (DOE-UCLA)P42357
IntAct (EBI)P42357
FunCoupENSG00000084110
BioGRIDHAL
STRING (EMBL)HAL
ZODIACHAL
Ontologies - Pathways
QuickGOP42357
Ontology : AmiGOhistidine ammonia-lyase activity  cytosol  histidine catabolic process  histidine catabolic process to glutamate and formamide  histidine catabolic process to glutamate and formate  
Ontology : EGO-EBIhistidine ammonia-lyase activity  cytosol  histidine catabolic process  histidine catabolic process to glutamate and formamide  histidine catabolic process to glutamate and formate  
Pathways : KEGGHistidine metabolism   
NDEx NetworkHAL
Atlas of Cancer Signalling NetworkHAL
Wikipedia pathwaysHAL
Orthology - Evolution
OrthoDB3034
GeneTree (enSembl)ENSG00000084110
Phylogenetic Trees/Animal Genes : TreeFamHAL
HOVERGENP42357
HOGENOMP42357
Homologs : HomoloGeneHAL
Homology/Alignments : Family Browser (UCSC)HAL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHAL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HAL
dbVarHAL
ClinVarHAL
1000_GenomesHAL 
Exome Variant ServerHAL
ExAC (Exome Aggregation Consortium)HAL (select the gene name)
Genetic variants : HAPMAP3034
Genomic Variants (DGV)HAL [DGVbeta]
DECIPHERHAL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHAL 
Mutations
ICGC Data PortalHAL 
TCGA Data PortalHAL 
Broad Tumor PortalHAL
OASIS PortalHAL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHAL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHAL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HAL
DgiDB (Drug Gene Interaction Database)HAL
DoCM (Curated mutations)HAL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HAL (select a term)
intoGenHAL
Cancer3DHAL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM235800    609457   
Orphanet3355   
MedgenHAL
Genetic Testing Registry HAL
NextProtP42357 [Medical]
TSGene3034
GENETestsHAL
Target ValidationHAL
Huge Navigator HAL [HugePedia]
snp3D : Map Gene to Disease3034
BioCentury BCIQHAL
ClinGenHAL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3034
Chemical/Pharm GKB GenePA29181
Clinical trialHAL
Miscellaneous
canSAR (ICR)HAL (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHAL
EVEXHAL
GoPubMedHAL
iHOPHAL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:13 CEST 2017

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