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HAMP (hepcidin antimicrobial peptide)

Identity

Other namesHEPC
HFE2B
LEAP1
PLTR
HGNC (Hugo) HAMP
LocusID (NCBI) 57817
Location 19q13.12
Location_base_pair Starts at 35773410 and ends at 35776045 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HAMP   15598
Entrez_Gene (NCBI)HAMP  57817  hepcidin antimicrobial peptide
Cards
GeneCards (Weizmann)HAMP
Ensembl (Hinxton) [Gene_View]  chr19:35773410-35776045 [Contig_View]  HAMP [Vega]
AceView (NCBI)HAMP
Genatlas (Paris)HAMP
SOURCE (Stanford)NM_021175
Genomic and cartography
GoldenPath (UCSC)HAMP  -  19q13.12   chr19:35773410-35776045 +  19q13.12   [Description]    (hg19-Feb_2009)
EnsemblHAMP - 19q13.12 [CytoView]
Mapping of homologs : NCBIHAMP [Mapview]
OMIM602390   606464   613313   
Gene and transcription
Genbank (Entrez)AF131292 AF147355 AF309489 AJ277280 AK096110
RefSeq transcript (SRS)NM_021175
RefSeq transcript (Entrez)NM_021175
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NG_011563 NT_011109 NW_001838494 NW_004078099
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NG_011563 NT_011109 NW_001838494 NW_004078099
Consensus coding sequences : CCDS (NCBI)HAMP
Cluster EST : UnigeneHs.8821 [ SRS ] Hs.8821 [ NCBI ]
CGAP (NCI)Hs.8821
Alternative Splicing : Fast-db (Paris)GSHG0014825
Gene ExpressionHAMP [ NCBI-GEO ]   HAMP [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP81172 (SRS) P81172 (Uniprot)
NextProtP81172
With graphics : InterProP81172
Splice isoforms : SwissVarP81172(Swissvar)
Domains : Interpro (SRS)Hepcidin   
Domains : Interpro (EBI)Hepcidin   
Related proteins : CluSTrP81172
Domain families : Pfam (SRS)Hepcidin (PF06446)   
Domain families : Pfam (Sanger)Hepcidin (PF06446)   
Domain families : Pfam (NCBI)pfam06446   
DMDM57817
Blocks (Seattle)P81172
PDB (SRS)1M4E    1M4F    2KEF    3H0T   
PDB (PDBSum)1M4E    1M4F    2KEF    3H0T   
PDB (IMB)1M4E    1M4F    2KEF    3H0T   
PDB (RSDB)1M4E    1M4F    2KEF    3H0T   
HPRD05925
IPIIPI00025992   IPI00432049   
Protein Interaction databases
DIP (DOE-UCLA)P81172
IntAct (EBI)P81172
REACTOMEHAMP
Protein Interaction Database57817
BioGRIDHAMP
InParanoidP81172
Interologous Interaction database P81172
IntegromeDBHAMP
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HAMP
SNP (GeneSNP Utah)HAMP
SNP : HGBaseHAMP
Genetic variants : HAPMAPHAMP
Somatic Mutations in Cancer : COSMICHAMP 
CONAN: Copy Number AnalysisHAMP 
Mutations and Diseases : HGMDHAMP
OMIM602390    606464    613313   
GENETests602390    606464    613313   
Disease Genetic AssociationHAMP
Huge Navigator HAMP [HugePedia]  HAMP [HugeCancerGEM]
Genomic VariantsHAMP  HAMP [DGVbeta]
ClinVarHAMP
snp3D : Map Gene to Disease57817
General knowledge
Homologs : HomoloGeneHAMP
Homology/Alignments : Family Browser (UCSC)HAMP
Phylogenetic Trees/Animal Genes : TreeFamHAMP
Chemical/Protein Interactions : CTD57817
Chemical/Pharm GKB GenePA29182
Clinical trialHAMP
Ontology : AmiGOhormone activity  extracellular region  cellular iron ion homeostasis  immune response  killing of cells of other organism  defense response to bacterium  defense response to fungus  
Ontology : EGO-EBIhormone activity  extracellular region  cellular iron ion homeostasis  immune response  killing of cells of other organism  defense response to bacterium  defense response to fungus  
Other databases
Probes
Litterature
PubMed223 Pubmed reference(s) in Entrez
PubGeneHAMP
iHOPHAMP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:34:08 CEST 2013
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