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HAPLN4 (hyaluronan and proteoglycan link protein 4)

Identity

Alias_symbol (synonym)BRAL2
KIAA1926
Other alias
HGNC (Hugo) HAPLN4
LocusID (NCBI) 404037
Atlas_Id 51221
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19255641 and ends at 19262787 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HAPLN4   31357
Cards
Entrez_Gene (NCBI)HAPLN4  404037  hyaluronan and proteoglycan link protein 4
AliasesBRAL2
GeneCards (Weizmann)HAPLN4
Ensembl hg19 (Hinxton)ENSG00000187664 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187664 [Gene_View]  chr19:19255641-19262787 [Contig_View]  HAPLN4 [Vega]
ICGC DataPortalENSG00000187664
TCGA cBioPortalHAPLN4
AceView (NCBI)HAPLN4
Genatlas (Paris)HAPLN4
WikiGenes404037
SOURCE (Princeton)HAPLN4
Genetics Home Reference (NIH)HAPLN4
Genomic and cartography
GoldenPath hg38 (UCSC)HAPLN4  -     chr19:19255641-19262787 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HAPLN4  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblHAPLN4 - 19p13.11 [CytoView hg19]  HAPLN4 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIHAPLN4 [Mapview hg19]  HAPLN4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB107883 AL389941 AY262756 BC142644 BC142698
RefSeq transcript (Entrez)NM_023002
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HAPLN4
Cluster EST : UnigeneHs.367829 [ NCBI ]
CGAP (NCI)Hs.367829
Alternative Splicing GalleryENSG00000187664
Gene ExpressionHAPLN4 [ NCBI-GEO ]   HAPLN4 [ EBI - ARRAY_EXPRESS ]   HAPLN4 [ SEEK ]   HAPLN4 [ MEM ]
Gene Expression Viewer (FireBrowse)HAPLN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)404037
GTEX Portal (Tissue expression)HAPLN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UW8
Splice isoforms : SwissVarQ86UW8
PhosPhoSitePlusQ86UW8
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    LINK_1 (PS01241)    LINK_2 (PS50963)   
Domains : Interpro (EBI)C-type_lectin-like/link    CTDL_fold    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set    Link_dom   
Domain families : Pfam (Sanger)V-set (PF07686)    Xlink (PF00193)   
Domain families : Pfam (NCBI)pfam07686    pfam00193   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  LINK (SM00445)  
Conserved Domain (NCBI)HAPLN4
DMDM Disease mutations404037
Blocks (Seattle)HAPLN4
SuperfamilyQ86UW8
Human Protein AtlasENSG00000187664
Peptide AtlasQ86UW8
HPRD13630
IPIIPI00044707   
Protein Interaction databases
DIP (DOE-UCLA)Q86UW8
IntAct (EBI)Q86UW8
FunCoupENSG00000187664
BioGRIDHAPLN4
STRING (EMBL)HAPLN4
ZODIACHAPLN4
Ontologies - Pathways
QuickGOQ86UW8
Ontology : AmiGOskeletal system development  extracellular matrix structural constituent  hyaluronic acid binding  proteinaceous extracellular matrix  cell adhesion  central nervous system development  
Ontology : EGO-EBIskeletal system development  extracellular matrix structural constituent  hyaluronic acid binding  proteinaceous extracellular matrix  cell adhesion  central nervous system development  
NDEx NetworkHAPLN4
Atlas of Cancer Signalling NetworkHAPLN4
Wikipedia pathwaysHAPLN4
Orthology - Evolution
OrthoDB404037
GeneTree (enSembl)ENSG00000187664
Phylogenetic Trees/Animal Genes : TreeFamHAPLN4
HOVERGENQ86UW8
HOGENOMQ86UW8
Homologs : HomoloGeneHAPLN4
Homology/Alignments : Family Browser (UCSC)HAPLN4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHAPLN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HAPLN4
dbVarHAPLN4
ClinVarHAPLN4
1000_GenomesHAPLN4 
Exome Variant ServerHAPLN4
ExAC (Exome Aggregation Consortium)HAPLN4 (select the gene name)
Genetic variants : HAPMAP404037
Genomic Variants (DGV)HAPLN4 [DGVbeta]
DECIPHERHAPLN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHAPLN4 
Mutations
ICGC Data PortalHAPLN4 
TCGA Data PortalHAPLN4 
Broad Tumor PortalHAPLN4
OASIS PortalHAPLN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHAPLN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHAPLN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HAPLN4
DgiDB (Drug Gene Interaction Database)HAPLN4
DoCM (Curated mutations)HAPLN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HAPLN4 (select a term)
intoGenHAPLN4
Cancer3DHAPLN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHAPLN4
Genetic Testing Registry HAPLN4
NextProtQ86UW8 [Medical]
TSGene404037
GENETestsHAPLN4
Target ValidationHAPLN4
Huge Navigator HAPLN4 [HugePedia]
snp3D : Map Gene to Disease404037
BioCentury BCIQHAPLN4
ClinGenHAPLN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD404037
Chemical/Pharm GKB GenePA134886721
Clinical trialHAPLN4
Miscellaneous
canSAR (ICR)HAPLN4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHAPLN4
EVEXHAPLN4
GoPubMedHAPLN4
iHOPHAPLN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:11:03 CEST 2017

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