Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HARBI1 (harbinger transposase derived 1)

Identity

Alias (NCBI)C11orf77
HGNC (Hugo) HARBI1
HGNC Alias symbFLJ32675
HGNC Previous nameC11orf77
HGNC Previous namechromosome 11 open reading frame 77
LocusID (NCBI) 283254
Atlas_Id 64171
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 46603306 and ends at 46617227 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AMBRA1 (11p11.2) / HARBI1 (11p11.2)HARBI1 (11p11.2) / TNS3 (7p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(7;11)(p12;p11) HARBI1/TNS3
AMBRA1/HARBI1 (11p11)


External links

Nomenclature
HGNC (Hugo)HARBI1   26522
Cards
Entrez_Gene (NCBI)HARBI1    harbinger transposase derived 1
AliasesC11orf77
GeneCards (Weizmann)HARBI1
Ensembl hg19 (Hinxton)ENSG00000180423 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180423 [Gene_View]  ENSG00000180423 [Sequence]  chr11:46603306-46617227 [Contig_View]  HARBI1 [Vega]
ICGC DataPortalENSG00000180423
TCGA cBioPortalHARBI1
AceView (NCBI)HARBI1
Genatlas (Paris)HARBI1
SOURCE (Princeton)HARBI1
Genetics Home Reference (NIH)HARBI1
Genomic and cartography
GoldenPath hg38 (UCSC)HARBI1  -     chr11:46603306-46617227 -  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HARBI1  -     11p11.2   [Description]    (hg19-Feb_2009)
GoldenPathHARBI1 - 11p11.2 [CytoView hg19]  HARBI1 - 11p11.2 [CytoView hg38]
ImmunoBaseENSG00000180423
genome Data Viewer NCBIHARBI1 [Mapview hg19]  
OMIM615086   
Gene and transcription
Genbank (Entrez)AK057237 BC036925 BM768489
RefSeq transcript (Entrez)NM_173811
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HARBI1
Alternative Splicing GalleryENSG00000180423
Gene ExpressionHARBI1 [ NCBI-GEO ]   HARBI1 [ EBI - ARRAY_EXPRESS ]   HARBI1 [ SEEK ]   HARBI1 [ MEM ]
Gene Expression Viewer (FireBrowse)HARBI1 [ Firebrowse - Broad ]
GenevisibleExpression of HARBI1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283254
GTEX Portal (Tissue expression)HARBI1
Human Protein AtlasENSG00000180423-HARBI1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MB7
Splice isoforms : SwissVarQ96MB7
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ96MB7
Domains : Interpro (EBI)HARBI1_animal    HARBI1_dom   
Domain families : Pfam (Sanger)DDE_Tnp_4 (PF13359)   
Domain families : Pfam (NCBI)pfam13359   
Conserved Domain (NCBI)HARBI1
Blocks (Seattle)HARBI1
SuperfamilyQ96MB7
Human Protein Atlas [tissue]ENSG00000180423-HARBI1 [tissue]
Peptide AtlasQ96MB7
HPRD08728
IPIIPI00065459   IPI00982317   IPI00982924   
Protein Interaction databases
DIP (DOE-UCLA)Q96MB7
IntAct (EBI)Q96MB7
BioGRIDHARBI1
STRING (EMBL)HARBI1
ZODIACHARBI1
Ontologies - Pathways
QuickGOQ96MB7
Ontology : AmiGOnuclease activity  nucleus  cytosol  plasma membrane  centriolar satellite  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBInuclease activity  nucleus  cytosol  plasma membrane  centriolar satellite  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkHARBI1
Atlas of Cancer Signalling NetworkHARBI1
Wikipedia pathwaysHARBI1
Orthology - Evolution
OrthoDB283254
GeneTree (enSembl)ENSG00000180423
Phylogenetic Trees/Animal Genes : TreeFamHARBI1
HOGENOMQ96MB7
Homologs : HomoloGeneHARBI1
Homology/Alignments : Family Browser (UCSC)HARBI1
Gene fusions - Rearrangements
Fusion : QuiverHARBI1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHARBI1 [hg38]
dbVarHARBI1
ClinVarHARBI1
MonarchHARBI1
1000_GenomesHARBI1 
Exome Variant ServerHARBI1
GNOMAD BrowserENSG00000180423
Varsome BrowserHARBI1
Genomic Variants (DGV)HARBI1 [DGVbeta]
DECIPHERHARBI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHARBI1 
Mutations
ICGC Data PortalHARBI1 
TCGA Data PortalHARBI1 
Broad Tumor PortalHARBI1
OASIS PortalHARBI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHARBI1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHARBI1
Mutations and Diseases : HGMDHARBI1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HARBI1
DgiDB (Drug Gene Interaction Database)HARBI1
DoCM (Curated mutations)HARBI1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HARBI1 (select a term)
intoGenHARBI1
Cancer3DHARBI1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615086   
Orphanet
DisGeNETHARBI1
MedgenHARBI1
Genetic Testing Registry HARBI1
NextProtQ96MB7 [Medical]
GENETestsHARBI1
Target ValidationHARBI1
Huge Navigator HARBI1 [HugePedia]
ClinGenHARBI1
Clinical trials, drugs, therapy
MyCancerGenomeHARBI1
Protein Interactions : CTD
Pharm GKB GenePA162390577
Clinical trialHARBI1
Miscellaneous
canSAR (ICR)HARBI1 (select the gene name)
HarmonizomeHARBI1
DataMed IndexHARBI1
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHARBI1
EVEXHARBI1
GoPubMedHARBI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:56:42 CET 2020

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