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HARBI1 (harbinger transposase derived 1)

Identity

Alias_namesC11orf77
chromosome 11 open reading frame 77
Alias_symbol (synonym)FLJ32675
Other alias
HGNC (Hugo) HARBI1
LocusID (NCBI) 283254
Atlas_Id 64171
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 46603306 and ends at 46617227 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AMBRA1 (11p11.2) / HARBI1 (11p11.2)HARBI1 (11p11.2) / TNS3 (7p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HARBI1   26522
Cards
Entrez_Gene (NCBI)HARBI1  283254  harbinger transposase derived 1
AliasesC11orf77
GeneCards (Weizmann)HARBI1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:46603306-46617227 [Contig_View]  HARBI1 [Vega]
TCGA cBioPortalHARBI1
AceView (NCBI)HARBI1
Genatlas (Paris)HARBI1
WikiGenes283254
SOURCE (Princeton)HARBI1
Genetics Home Reference (NIH)HARBI1
Genomic and cartography
GoldenPath hg38 (UCSC)HARBI1  -     chr11:46603306-46617227 -  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HARBI1  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblHARBI1 - 11p11.2 [CytoView hg19]  HARBI1 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIHARBI1 [Mapview hg19]  HARBI1 [Mapview hg38]
OMIM615086   
Gene and transcription
Genbank (Entrez)AK057237 BC036925 BM768489
RefSeq transcript (Entrez)NM_173811
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HARBI1
Cluster EST : UnigeneHs.714463 [ NCBI ]
CGAP (NCI)Hs.714463
Gene ExpressionHARBI1 [ NCBI-GEO ]   HARBI1 [ EBI - ARRAY_EXPRESS ]   HARBI1 [ SEEK ]   HARBI1 [ MEM ]
Gene Expression Viewer (FireBrowse)HARBI1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283254
GTEX Portal (Tissue expression)HARBI1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MB7
Splice isoforms : SwissVarQ96MB7
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
PhosPhoSitePlusQ96MB7
Domains : Interpro (EBI)HARBI1_animal    HARBI1_dom   
Domain families : Pfam (Sanger)DDE_Tnp_4 (PF13359)   
Domain families : Pfam (NCBI)pfam13359   
Conserved Domain (NCBI)HARBI1
DMDM Disease mutations283254
Blocks (Seattle)HARBI1
SuperfamilyQ96MB7
Peptide AtlasQ96MB7
HPRD08728
IPIIPI00065459   IPI00982317   IPI00982924   
Protein Interaction databases
DIP (DOE-UCLA)Q96MB7
IntAct (EBI)Q96MB7
BioGRIDHARBI1
STRING (EMBL)HARBI1
ZODIACHARBI1
Ontologies - Pathways
QuickGOQ96MB7
Ontology : AmiGOnuclease activity  nucleus  microtubule organizing center  cytosol  plasma membrane  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBInuclease activity  nucleus  microtubule organizing center  cytosol  plasma membrane  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkHARBI1
Atlas of Cancer Signalling NetworkHARBI1
Wikipedia pathwaysHARBI1
Orthology - Evolution
OrthoDB283254
Phylogenetic Trees/Animal Genes : TreeFamHARBI1
HOVERGENQ96MB7
HOGENOMQ96MB7
Homologs : HomoloGeneHARBI1
Homology/Alignments : Family Browser (UCSC)HARBI1
Gene fusions - Rearrangements
Tumor Fusion PortalHARBI1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHARBI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HARBI1
dbVarHARBI1
ClinVarHARBI1
1000_GenomesHARBI1 
Exome Variant ServerHARBI1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP283254
Genomic Variants (DGV)HARBI1 [DGVbeta]
DECIPHERHARBI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHARBI1 
Mutations
ICGC Data PortalHARBI1 
TCGA Data PortalHARBI1 
Broad Tumor PortalHARBI1
OASIS PortalHARBI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHARBI1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHARBI1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HARBI1
DgiDB (Drug Gene Interaction Database)HARBI1
DoCM (Curated mutations)HARBI1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HARBI1 (select a term)
intoGenHARBI1
Cancer3DHARBI1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615086   
Orphanet
DisGeNETHARBI1
MedgenHARBI1
Genetic Testing Registry HARBI1
NextProtQ96MB7 [Medical]
TSGene283254
GENETestsHARBI1
Target ValidationHARBI1
Huge Navigator HARBI1 [HugePedia]
snp3D : Map Gene to Disease283254
BioCentury BCIQHARBI1
ClinGenHARBI1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283254
Chemical/Pharm GKB GenePA162390577
Clinical trialHARBI1
Miscellaneous
canSAR (ICR)HARBI1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHARBI1
EVEXHARBI1
GoPubMedHARBI1
iHOPHARBI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:23:31 CET 2017

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