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HAS1 (hyaluronan synthase 1)

Identity

Alias_namesHAS
Other alias
HGNC (Hugo) HAS1
LocusID (NCBI) 3036
Atlas_Id 40787
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52216365 and ends at 52227245 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HAS1   4818
Cards
Entrez_Gene (NCBI)HAS1  3036  hyaluronan synthase 1
AliasesHAS
GeneCards (Weizmann)HAS1
Ensembl hg19 (Hinxton)ENSG00000105509 [Gene_View]  chr19:52216365-52227245 [Contig_View]  HAS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105509 [Gene_View]  chr19:52216365-52227245 [Contig_View]  HAS1 [Vega]
ICGC DataPortalENSG00000105509
TCGA cBioPortalHAS1
AceView (NCBI)HAS1
Genatlas (Paris)HAS1
WikiGenes3036
SOURCE (Princeton)HAS1
Genetics Home Reference (NIH)HAS1
Genomic and cartography
GoldenPath hg19 (UCSC)HAS1  -     chr19:52216365-52227245 -  19q13.41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HAS1  -     19q13.41   [Description]    (hg38-Dec_2013)
EnsemblHAS1 - 19q13.41 [CytoView hg19]  HAS1 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIHAS1 [Mapview hg19]  HAS1 [Mapview hg38]
OMIM601463   
Gene and transcription
Genbank (Entrez)AM904814 AY916554 AY916555 AY916556 BC035837
RefSeq transcript (Entrez)NM_001297436 NM_001523
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)HAS1
Cluster EST : UnigeneHs.57697 [ NCBI ]
CGAP (NCI)Hs.57697
Alternative Splicing GalleryENSG00000105509
Gene ExpressionHAS1 [ NCBI-GEO ]   HAS1 [ EBI - ARRAY_EXPRESS ]   HAS1 [ SEEK ]   HAS1 [ MEM ]
Gene Expression Viewer (FireBrowse)HAS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3036
GTEX Portal (Tissue expression)HAS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92839   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92839  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92839
Splice isoforms : SwissVarQ92839
Catalytic activity : Enzyme2.4.1.212 [ Enzyme-Expasy ]   2.4.1.2122.4.1.212 [ IntEnz-EBI ]   2.4.1.212 [ BRENDA ]   2.4.1.212 [ KEGG ]   
PhosPhoSitePlusQ92839
Domains : Interpro (EBI)HAS/NodC    HAS1    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HAS1
DMDM Disease mutations3036
Blocks (Seattle)HAS1
SuperfamilyQ92839
Human Protein AtlasENSG00000105509
Peptide AtlasQ92839
HPRD03271
IPIIPI00023768   IPI00607770   IPI00607694   IPI00913960   
Protein Interaction databases
DIP (DOE-UCLA)Q92839
IntAct (EBI)Q92839
FunCoupENSG00000105509
BioGRIDHAS1
STRING (EMBL)HAS1
ZODIACHAS1
Ontologies - Pathways
QuickGOQ92839
Ontology : AmiGOcytoplasm  plasma membrane  integral component of plasma membrane  glycosaminoglycan biosynthetic process  cell adhesion  negative regulation of fibroblast migration  hyaluronan biosynthetic process  hyaluronan biosynthetic process  hyaluronan biosynthetic process  cellular response to platelet-derived growth factor stimulus  estrous cycle  extracellular polysaccharide biosynthetic process  extracellular polysaccharide biosynthetic process  hyaluronan synthase activity  hyaluronan synthase activity  hyaluronan synthase activity  extracellular matrix assembly  extracellular matrix assembly  
Ontology : EGO-EBIcytoplasm  plasma membrane  integral component of plasma membrane  glycosaminoglycan biosynthetic process  cell adhesion  negative regulation of fibroblast migration  hyaluronan biosynthetic process  hyaluronan biosynthetic process  hyaluronan biosynthetic process  cellular response to platelet-derived growth factor stimulus  estrous cycle  extracellular polysaccharide biosynthetic process  extracellular polysaccharide biosynthetic process  hyaluronan synthase activity  hyaluronan synthase activity  hyaluronan synthase activity  extracellular matrix assembly  extracellular matrix assembly  
NDEx NetworkHAS1
Atlas of Cancer Signalling NetworkHAS1
Wikipedia pathwaysHAS1
Orthology - Evolution
OrthoDB3036
GeneTree (enSembl)ENSG00000105509
Phylogenetic Trees/Animal Genes : TreeFamHAS1
HOVERGENQ92839
HOGENOMQ92839
Homologs : HomoloGeneHAS1
Homology/Alignments : Family Browser (UCSC)HAS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHAS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HAS1
dbVarHAS1
ClinVarHAS1
1000_GenomesHAS1 
Exome Variant ServerHAS1
ExAC (Exome Aggregation Consortium)HAS1 (select the gene name)
Genetic variants : HAPMAP3036
Genomic Variants (DGV)HAS1 [DGVbeta]
DECIPHER (Syndromes)19:52216365-52227245  ENSG00000105509
CONAN: Copy Number AnalysisHAS1 
Mutations
ICGC Data PortalHAS1 
TCGA Data PortalHAS1 
Broad Tumor PortalHAS1
OASIS PortalHAS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHAS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHAS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HAS1
DgiDB (Drug Gene Interaction Database)HAS1
DoCM (Curated mutations)HAS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HAS1 (select a term)
intoGenHAS1
Cancer3DHAS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601463   
Orphanet
MedgenHAS1
Genetic Testing Registry HAS1
NextProtQ92839 [Medical]
TSGene3036
GENETestsHAS1
Huge Navigator HAS1 [HugePedia]
snp3D : Map Gene to Disease3036
BioCentury BCIQHAS1
ClinGenHAS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3036
Chemical/Pharm GKB GenePA29194
Clinical trialHAS1
Miscellaneous
canSAR (ICR)HAS1 (select the gene name)
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHAS1
EVEXHAS1
GoPubMedHAS1
iHOPHAS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:08:36 CET 2017

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