Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HAVCR1 (hepatitis A virus cellular receptor 1)

Identity

Alias_symbol (synonym)HAVCR-1
TIM-1
TIM1
HAVCR
TIMD1
CD365
KIM1
Other aliasKIM-1
TIM
TIMD-1
HGNC (Hugo) HAVCR1
LocusID (NCBI) 26762
Atlas_Id 40789
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 157029413 and ends at 157059119 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HAVCR1 (5q33.3) / HAVCR1 (5q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HAVCR1   17866
Cards
Entrez_Gene (NCBI)HAVCR1  26762  hepatitis A virus cellular receptor 1
AliasesCD365; HAVCR; HAVCR-1; KIM-1; 
KIM1; TIM; TIM-1; TIM1; TIMD-1; TIMD1
GeneCards (Weizmann)HAVCR1
Ensembl hg19 (Hinxton)ENSG00000113249 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113249 [Gene_View]  chr5:157029413-157059119 [Contig_View]  HAVCR1 [Vega]
ICGC DataPortalENSG00000113249
TCGA cBioPortalHAVCR1
AceView (NCBI)HAVCR1
Genatlas (Paris)HAVCR1
WikiGenes26762
SOURCE (Princeton)HAVCR1
Genetics Home Reference (NIH)HAVCR1
Genomic and cartography
GoldenPath hg38 (UCSC)HAVCR1  -     chr5:157029413-157059119 -  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HAVCR1  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblHAVCR1 - 5q33.3 [CytoView hg19]  HAVCR1 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBIHAVCR1 [Mapview hg19]  HAVCR1 [Mapview hg38]
OMIM147050   606518   
Gene and transcription
Genbank (Entrez)AF043724 AK298259 AW604297 BC013325 BG752287
RefSeq transcript (Entrez)NM_001099414 NM_001173393 NM_001308156 NM_012206
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HAVCR1
Cluster EST : UnigeneHs.129711 [ NCBI ]
CGAP (NCI)Hs.129711
Alternative Splicing GalleryENSG00000113249
Gene ExpressionHAVCR1 [ NCBI-GEO ]   HAVCR1 [ EBI - ARRAY_EXPRESS ]   HAVCR1 [ SEEK ]   HAVCR1 [ MEM ]
Gene Expression Viewer (FireBrowse)HAVCR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26762
GTEX Portal (Tissue expression)HAVCR1
Human Protein AtlasENSG00000113249-HAVCR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96D42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96D42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96D42
Splice isoforms : SwissVarQ96D42
PhosPhoSitePlusQ96D42
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IG_MHC (PS00290)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig/MHC_CS    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)HAVCR1
DMDM Disease mutations26762
Blocks (Seattle)HAVCR1
PDB (SRS)5DZO    5F70   
PDB (PDBSum)5DZO    5F70   
PDB (IMB)5DZO    5F70   
PDB (RSDB)5DZO    5F70   
Structural Biology KnowledgeBase5DZO    5F70   
SCOP (Structural Classification of Proteins)5DZO    5F70   
CATH (Classification of proteins structures)5DZO    5F70   
SuperfamilyQ96D42
Human Protein Atlas [tissue]ENSG00000113249-HAVCR1 [tissue]
Peptide AtlasQ96D42
HPRD09404
IPIIPI00101048   IPI01015292   IPI00909858   IPI00982764   
Protein Interaction databases
DIP (DOE-UCLA)Q96D42
IntAct (EBI)Q96D42
FunCoupENSG00000113249
BioGRIDHAVCR1
STRING (EMBL)HAVCR1
ZODIACHAVCR1
Ontologies - Pathways
QuickGOQ96D42
Ontology : AmiGOvirus receptor activity  integral component of membrane  motile cilium  viral entry into host cell  
Ontology : EGO-EBIvirus receptor activity  integral component of membrane  motile cilium  viral entry into host cell  
NDEx NetworkHAVCR1
Atlas of Cancer Signalling NetworkHAVCR1
Wikipedia pathwaysHAVCR1
Orthology - Evolution
OrthoDB26762
GeneTree (enSembl)ENSG00000113249
Phylogenetic Trees/Animal Genes : TreeFamHAVCR1
HOVERGENQ96D42
HOGENOMQ96D42
Homologs : HomoloGeneHAVCR1
Homology/Alignments : Family Browser (UCSC)HAVCR1
Gene fusions - Rearrangements
Tumor Fusion PortalHAVCR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHAVCR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HAVCR1
dbVarHAVCR1
ClinVarHAVCR1
1000_GenomesHAVCR1 
Exome Variant ServerHAVCR1
ExAC (Exome Aggregation Consortium)ENSG00000113249
GNOMAD BrowserENSG00000113249
Genetic variants : HAPMAP26762
Genomic Variants (DGV)HAVCR1 [DGVbeta]
DECIPHERHAVCR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHAVCR1 
Mutations
ICGC Data PortalHAVCR1 
TCGA Data PortalHAVCR1 
Broad Tumor PortalHAVCR1
OASIS PortalHAVCR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHAVCR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHAVCR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HAVCR1
DgiDB (Drug Gene Interaction Database)HAVCR1
DoCM (Curated mutations)HAVCR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HAVCR1 (select a term)
intoGenHAVCR1
Cancer3DHAVCR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147050    606518   
Orphanet
DisGeNETHAVCR1
MedgenHAVCR1
Genetic Testing Registry HAVCR1
NextProtQ96D42 [Medical]
TSGene26762
GENETestsHAVCR1
Target ValidationHAVCR1
Huge Navigator HAVCR1 [HugePedia]
snp3D : Map Gene to Disease26762
BioCentury BCIQHAVCR1
ClinGenHAVCR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26762
Chemical/Pharm GKB GenePA134924567
Clinical trialHAVCR1
Miscellaneous
canSAR (ICR)HAVCR1 (select the gene name)
Probes
Litterature
PubMed164 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHAVCR1
EVEXHAVCR1
GoPubMedHAVCR1
iHOPHAVCR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:15:45 CET 2017

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