Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HAVCR1P1 (hepatitis A virus cellular receptor 1 pseudogene 1)

Identity

Other alias-
HGNC (Hugo) HAVCR1P1
LocusID (NCBI) 100101266
Atlas_Id 64180
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 24162193 and ends at 24163447 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HAVCR1P1   44033
Cards
Entrez_Gene (NCBI)HAVCR1P1  100101266  hepatitis A virus cellular receptor 1 pseudogene 1
Aliases
GeneCards (Weizmann)HAVCR1P1
Ensembl hg19 (Hinxton)ENSG00000268442 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000268442 [Gene_View]  ENSG00000268442 [Sequence]  chr19:24162193-24163447 [Contig_View]  HAVCR1P1 [Vega]
ICGC DataPortalENSG00000268442
TCGA cBioPortalHAVCR1P1
AceView (NCBI)HAVCR1P1
Genatlas (Paris)HAVCR1P1
WikiGenes100101266
SOURCE (Princeton)HAVCR1P1
Genetics Home Reference (NIH)HAVCR1P1
Genomic and cartography
GoldenPath hg38 (UCSC)HAVCR1P1  -     chr19:24162193-24163447 -  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HAVCR1P1  -     19p12   [Description]    (hg19-Feb_2009)
HAVCR1P1 - 19p12 [CytoView hg19]  HAVCR1P1 - 19p12 [CytoView hg38]
Mapping of homologs : NCBIHAVCR1P1 [Mapview hg19]  HAVCR1P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI283084 BX114328
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HAVCR1P1
Cluster EST : UnigeneHs.744836 [ NCBI ]
CGAP (NCI)Hs.744836
Alternative Splicing GalleryENSG00000268442
Gene ExpressionHAVCR1P1 [ NCBI-GEO ]   HAVCR1P1 [ EBI - ARRAY_EXPRESS ]   HAVCR1P1 [ SEEK ]   HAVCR1P1 [ MEM ]
Gene Expression Viewer (FireBrowse)HAVCR1P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100101266
GTEX Portal (Tissue expression)HAVCR1P1
Human Protein AtlasENSG00000268442-HAVCR1P1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HAVCR1P1
DMDM Disease mutations100101266
Blocks (Seattle)HAVCR1P1
Human Protein Atlas [tissue]ENSG00000268442-HAVCR1P1 [tissue]
Protein Interaction databases
FunCoupENSG00000268442
BioGRIDHAVCR1P1
STRING (EMBL)HAVCR1P1
ZODIACHAVCR1P1
Ontologies - Pathways
Huge Navigator HAVCR1P1 [HugePedia]
snp3D : Map Gene to Disease100101266
BioCentury BCIQHAVCR1P1
ClinGenHAVCR1P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100101266
Clinical trialHAVCR1P1
Miscellaneous
canSAR (ICR)HAVCR1P1 (select the gene name)
DataMed IndexHAVCR1P1
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineHAVCR1P1
EVEXHAVCR1P1
GoPubMedHAVCR1P1
iHOPHAVCR1P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:30:18 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.