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HBG1 (hemoglobin subunit gamma 1)

Identity

Alias_nameshemoglobin
Alias_symbol (synonym)HBG-T2
Other aliasHBGA
HBGR
HSGGL1
PRO2979
HGNC (Hugo) HBG1
LocusID (NCBI) 3047
Atlas_Id 56256
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5269502 and ends at 5271087 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HBG1 (11p15.4) / ANXA7 (10q22.2)HBG1 (11p15.4) / HBG1 (11p15.4)HBG1 (11p15.4) / RBP4 (10q23.33)
KLF3 (4p14) / HBG1 (11p15.4)MYLPF (16p11.2) / HBG1 (11p15.4)SPP2 (2q37.1) / HBG1 (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HBG1   4831
Cards
Entrez_Gene (NCBI)HBG1  3047  hemoglobin subunit gamma 1
AliasesHBG-T2; HBGA; HBGR; HSGGL1; 
PRO2979
GeneCards (Weizmann)HBG1
Ensembl hg19 (Hinxton)ENSG00000213934 [Gene_View]  chr11:5269502-5271087 [Contig_View]  HBG1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213934 [Gene_View]  chr11:5269502-5271087 [Contig_View]  HBG1 [Vega]
ICGC DataPortalENSG00000213934
TCGA cBioPortalHBG1
AceView (NCBI)HBG1
Genatlas (Paris)HBG1
WikiGenes3047
SOURCE (Princeton)HBG1
Genetics Home Reference (NIH)HBG1
Genomic and cartography
GoldenPath hg19 (UCSC)HBG1  -     chr11:5269502-5271087 -  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HBG1  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblHBG1 - 11p15.4 [CytoView hg19]  HBG1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIHBG1 [Mapview hg19]  HBG1 [Mapview hg38]
OMIM141749   142200   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_000559
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HBG1
Cluster EST : UnigeneHs.702189 [ NCBI ]
CGAP (NCI)Hs.702189
Alternative Splicing GalleryENSG00000213934
Gene ExpressionHBG1 [ NCBI-GEO ]   HBG1 [ EBI - ARRAY_EXPRESS ]   HBG1 [ SEEK ]   HBG1 [ MEM ]
Gene Expression Viewer (FireBrowse)HBG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3047
GTEX Portal (Tissue expression)HBG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP69891   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP69891  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP69891
Splice isoforms : SwissVarP69891
PhosPhoSitePlusP69891
Domaine pattern : Prosite (Expaxy)GLOBIN (PS01033)   
Domains : Interpro (EBI)Globin    Globin-like    Globin/Proto    Haemoglobin_b   
Domain families : Pfam (Sanger)Globin (PF00042)   
Domain families : Pfam (NCBI)pfam00042   
Conserved Domain (NCBI)HBG1
DMDM Disease mutations3047
Blocks (Seattle)HBG1
PDB (SRS)1I3D    1I3E   
PDB (PDBSum)1I3D    1I3E   
PDB (IMB)1I3D    1I3E   
PDB (RSDB)1I3D    1I3E   
Structural Biology KnowledgeBase1I3D    1I3E   
SCOP (Structural Classification of Proteins)1I3D    1I3E   
CATH (Classification of proteins structures)1I3D    1I3E   
SuperfamilyP69891
Human Protein AtlasENSG00000213934
Peptide AtlasP69891
HPRD00789
IPIIPI00220706   IPI00956355   IPI00744503   
Protein Interaction databases
DIP (DOE-UCLA)P69891
IntAct (EBI)P69891
FunCoupENSG00000213934
BioGRIDHBG1
STRING (EMBL)HBG1
ZODIACHBG1
Ontologies - Pathways
QuickGOP69891
Ontology : AmiGOoxygen transporter activity  iron ion binding  cytosol  hemoglobin complex  blood coagulation  oxygen transport  oxygen binding  heme binding  
Ontology : EGO-EBIoxygen transporter activity  iron ion binding  cytosol  hemoglobin complex  blood coagulation  oxygen transport  oxygen binding  heme binding  
NDEx NetworkHBG1
Atlas of Cancer Signalling NetworkHBG1
Wikipedia pathwaysHBG1
Orthology - Evolution
OrthoDB3047
GeneTree (enSembl)ENSG00000213934
Phylogenetic Trees/Animal Genes : TreeFamHBG1
HOVERGENP69891
HOGENOMP69891
Homologs : HomoloGeneHBG1
Homology/Alignments : Family Browser (UCSC)HBG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHBG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HBG1
dbVarHBG1
ClinVarHBG1
1000_GenomesHBG1 
Exome Variant ServerHBG1
ExAC (Exome Aggregation Consortium)HBG1 (select the gene name)
Genetic variants : HAPMAP3047
Genomic Variants (DGV)HBG1 [DGVbeta]
DECIPHER (Syndromes)11:5269502-5271087  ENSG00000213934
CONAN: Copy Number AnalysisHBG1 
Mutations
ICGC Data PortalHBG1 
TCGA Data PortalHBG1 
Broad Tumor PortalHBG1
OASIS PortalHBG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHBG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHBG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)The Globin Gene Server
BioMutasearch HBG1
DgiDB (Drug Gene Interaction Database)HBG1
DoCM (Curated mutations)HBG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HBG1 (select a term)
intoGenHBG1
Cancer3DHBG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM141749    142200   
Orphanet19638    19175    10601   
MedgenHBG1
Genetic Testing Registry HBG1
NextProtP69891 [Medical]
TSGene3047
GENETestsHBG1
Huge Navigator HBG1 [HugePedia]
snp3D : Map Gene to Disease3047
BioCentury BCIQHBG1
ClinGenHBG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3047
Chemical/Pharm GKB GenePA29206
Clinical trialHBG1
Miscellaneous
canSAR (ICR)HBG1 (select the gene name)
Probes
Litterature
PubMed170 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHBG1
EVEXHBG1
GoPubMedHBG1
iHOPHBG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:03:26 CEST 2017

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