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HBG2 (hemoglobin subunit gamma 2)

Identity

Alias (NCBI)HBG-T1
TNCY
HGNC (Hugo) HBG2
HGNC Alias symbHBG-T1
HGNC Previous namehemoglobin, gamma G
LocusID (NCBI) 3048
Atlas_Id 64186
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5253188 and ends at 5254781 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CFAP126 (1q23.3) / HBG2 (11p15.4)GLUD1 (10q23.2) / HBG2 (11p15.4)HBG2 (11p15.4) / SERPINH1 (11q13.5)
HBG2 (11p15.4) / TNKS2 (10q23.32)HBG2 (11p15.4) / TRIM22 (11p15.4)HBG2 (11p15.4) / ZEB2 (2q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)HBG2   4832
Cards
Entrez_Gene (NCBI)HBG2    hemoglobin subunit gamma 2
AliasesHBG-T1; TNCY
GeneCards (Weizmann)HBG2
Ensembl hg19 (Hinxton)ENSG00000196565 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196565 [Gene_View]  ENSG00000196565 [Sequence]  chr11:5253188-5254781 [Contig_View]  HBG2 [Vega]
ICGC DataPortalENSG00000196565
TCGA cBioPortalHBG2
AceView (NCBI)HBG2
Genatlas (Paris)HBG2
SOURCE (Princeton)HBG2
Genetics Home Reference (NIH)HBG2
Genomic and cartography
GoldenPath hg38 (UCSC)HBG2  -     chr11:5253188-5254781 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HBG2  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathHBG2 - 11p15.4 [CytoView hg19]  HBG2 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000196565
Genome Data Viewer NCBIHBG2 [Mapview hg19]  
OMIM141749   142250   613977   
Gene and transcription
Genbank (Entrez)AF110493 AK290492 BC010914 BC029387 BC130457
RefSeq transcript (Entrez)NM_000184
Consensus coding sequences : CCDS (NCBI)HBG2
Gene ExpressionHBG2 [ NCBI-GEO ]   HBG2 [ EBI - ARRAY_EXPRESS ]   HBG2 [ SEEK ]   HBG2 [ MEM ]
Gene Expression Viewer (FireBrowse)HBG2 [ Firebrowse - Broad ]
GenevisibleExpression of HBG2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3048
GTEX Portal (Tissue expression)HBG2
Human Protein AtlasENSG00000196565-HBG2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP69892   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP69892  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP69892
PhosPhoSitePlusP69892
Domaine pattern : Prosite (Expaxy)GLOBIN (PS01033)   
Domains : Interpro (EBI)Globin    Globin-like_sf    Globin/Proto    Haemoglobin_b   
Domain families : Pfam (Sanger)Globin (PF00042)   
Domain families : Pfam (NCBI)pfam00042   
Conserved Domain (NCBI)HBG2
PDB (RSDB)1FDH    4MQJ    4MQK   
PDB Europe1FDH    4MQJ    4MQK   
PDB (PDBSum)1FDH    4MQJ    4MQK   
PDB (IMB)1FDH    4MQJ    4MQK   
Structural Biology KnowledgeBase1FDH    4MQJ    4MQK   
SCOP (Structural Classification of Proteins)1FDH    4MQJ    4MQK   
CATH (Classification of proteins structures)1FDH    4MQJ    4MQK   
SuperfamilyP69892
AlphaFold pdb e-kbP69892   
Human Protein Atlas [tissue]ENSG00000196565-HBG2 [tissue]
HPRD00792
Protein Interaction databases
DIP (DOE-UCLA)P69892
IntAct (EBI)P69892
BioGRIDHBG2
STRING (EMBL)HBG2
ZODIACHBG2
Ontologies - Pathways
QuickGOP69892
Ontology : AmiGOperoxidase activity  oxygen carrier activity  protein binding  cytosol  hemoglobin complex  blood coagulation  oxygen transport  oxygen binding  heme binding  haptoglobin binding  hemoglobin alpha binding  haptoglobin-hemoglobin complex  hydrogen peroxide catabolic process  organic acid binding  metal ion binding  blood microparticle  cellular oxidant detoxification  
Ontology : EGO-EBIperoxidase activity  oxygen carrier activity  protein binding  cytosol  hemoglobin complex  blood coagulation  oxygen transport  oxygen binding  heme binding  haptoglobin binding  hemoglobin alpha binding  haptoglobin-hemoglobin complex  hydrogen peroxide catabolic process  organic acid binding  metal ion binding  blood microparticle  cellular oxidant detoxification  
NDEx NetworkHBG2
Atlas of Cancer Signalling NetworkHBG2
Wikipedia pathwaysHBG2
Orthology - Evolution
OrthoDB3048
GeneTree (enSembl)ENSG00000196565
Phylogenetic Trees/Animal Genes : TreeFamHBG2
Homologs : HomoloGeneHBG2
Homology/Alignments : Family Browser (UCSC)HBG2
Gene fusions - Rearrangements
Fusion : QuiverHBG2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHBG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HBG2
dbVarHBG2
ClinVarHBG2
MonarchHBG2
1000_GenomesHBG2 
Exome Variant ServerHBG2
GNOMAD BrowserENSG00000196565
Varsome BrowserHBG2
ACMGHBG2 variants
VarityP69892
Genomic Variants (DGV)HBG2 [DGVbeta]
DECIPHERHBG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHBG2 
Mutations
ICGC Data PortalHBG2 
TCGA Data PortalHBG2 
Broad Tumor PortalHBG2
OASIS PortalHBG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHBG2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHBG2
Mutations and Diseases : HGMDHBG2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaHBG2
DgiDB (Drug Gene Interaction Database)HBG2
DoCM (Curated mutations)HBG2
CIViC (Clinical Interpretations of Variants in Cancer)HBG2
Cancer3DHBG2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM141749    142250    613977   
Orphanet19638    20481    10601   
DisGeNETHBG2
MedgenHBG2
Genetic Testing Registry HBG2
NextProtP69892 [Medical]
GENETestsHBG2
Target ValidationHBG2
Huge Navigator HBG2 [HugePedia]
ClinGenHBG2
Clinical trials, drugs, therapy
MyCancerGenomeHBG2
Protein Interactions : CTDHBG2
Pharm GKB GenePA29207
PharosP69892
Clinical trialHBG2
Miscellaneous
canSAR (ICR)HBG2
HarmonizomeHBG2
DataMed IndexHBG2
Probes
Litterature
PubMed167 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHBG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:52:41 CEST 2021

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