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HBG2 (hemoglobin subunit gamma 2)

Identity

Alias_nameshemoglobin, gamma G
Alias_symbol (synonym)HBG-T1
Other aliasTNCY
HGNC (Hugo) HBG2
LocusID (NCBI) 3048
Atlas_Id 64186
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5253191 and ends at 5254781 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CFAP126 (1q23.3) / HBG2 (11p15.4)GLUD1 (10q23.2) / HBG2 (11p15.4)HBG2 (11p15.4) / SERPINH1 (11q13.5)
HBG2 (11p15.4) / TNKS2 (10q23.32)HBG2 (11p15.4) / TRIM22 (11p15.4)HBG2 (11p15.4) / ZEB2 (2q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HBG2   4832
Cards
Entrez_Gene (NCBI)HBG2  3048  hemoglobin subunit gamma 2
AliasesHBG-T1; TNCY
GeneCards (Weizmann)HBG2
Ensembl hg19 (Hinxton)ENSG00000196565 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196565 [Gene_View]  chr11:5253191-5254781 [Contig_View]  HBG2 [Vega]
ICGC DataPortalENSG00000196565
TCGA cBioPortalHBG2
AceView (NCBI)HBG2
Genatlas (Paris)HBG2
WikiGenes3048
SOURCE (Princeton)HBG2
Genetics Home Reference (NIH)HBG2
Genomic and cartography
GoldenPath hg38 (UCSC)HBG2  -     chr11:5253191-5254781 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HBG2  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblHBG2 - 11p15.4 [CytoView hg19]  HBG2 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIHBG2 [Mapview hg19]  HBG2 [Mapview hg38]
OMIM141749   142250   613977   
Gene and transcription
Genbank (Entrez)AF110493 AK290492 BC010914 BC029387 BC130457
RefSeq transcript (Entrez)NM_000184
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HBG2
Cluster EST : UnigeneHs.702189 [ NCBI ]
CGAP (NCI)Hs.702189
Alternative Splicing GalleryENSG00000196565
Gene ExpressionHBG2 [ NCBI-GEO ]   HBG2 [ EBI - ARRAY_EXPRESS ]   HBG2 [ SEEK ]   HBG2 [ MEM ]
Gene Expression Viewer (FireBrowse)HBG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3048
GTEX Portal (Tissue expression)HBG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP69892   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP69892  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP69892
Splice isoforms : SwissVarP69892
PhosPhoSitePlusP69892
Domaine pattern : Prosite (Expaxy)GLOBIN (PS01033)   
Domains : Interpro (EBI)Globin    Globin-like    Globin/Proto    Haemoglobin_b   
Domain families : Pfam (Sanger)Globin (PF00042)   
Domain families : Pfam (NCBI)pfam00042   
Conserved Domain (NCBI)HBG2
DMDM Disease mutations3048
Blocks (Seattle)HBG2
PDB (SRS)1FDH    4MQJ    4MQK   
PDB (PDBSum)1FDH    4MQJ    4MQK   
PDB (IMB)1FDH    4MQJ    4MQK   
PDB (RSDB)1FDH    4MQJ    4MQK   
Structural Biology KnowledgeBase1FDH    4MQJ    4MQK   
SCOP (Structural Classification of Proteins)1FDH    4MQJ    4MQK   
CATH (Classification of proteins structures)1FDH    4MQJ    4MQK   
SuperfamilyP69892
Human Protein AtlasENSG00000196565
Peptide AtlasP69892
HPRD00792
IPIIPI00554676   IPI00939544   IPI00939160   IPI00749035   IPI00657911   IPI00893419   
Protein Interaction databases
DIP (DOE-UCLA)P69892
IntAct (EBI)P69892
FunCoupENSG00000196565
BioGRIDHBG2
STRING (EMBL)HBG2
ZODIACHBG2
Ontologies - Pathways
QuickGOP69892
Ontology : AmiGOoxygen transporter activity  iron ion binding  cytosol  hemoglobin complex  blood coagulation  oxygen transport  oxygen binding  heme binding  blood microparticle  
Ontology : EGO-EBIoxygen transporter activity  iron ion binding  cytosol  hemoglobin complex  blood coagulation  oxygen transport  oxygen binding  heme binding  blood microparticle  
NDEx NetworkHBG2
Atlas of Cancer Signalling NetworkHBG2
Wikipedia pathwaysHBG2
Orthology - Evolution
OrthoDB3048
GeneTree (enSembl)ENSG00000196565
Phylogenetic Trees/Animal Genes : TreeFamHBG2
HOVERGENP69892
HOGENOMP69892
Homologs : HomoloGeneHBG2
Homology/Alignments : Family Browser (UCSC)HBG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHBG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HBG2
dbVarHBG2
ClinVarHBG2
1000_GenomesHBG2 
Exome Variant ServerHBG2
ExAC (Exome Aggregation Consortium)HBG2 (select the gene name)
Genetic variants : HAPMAP3048
Genomic Variants (DGV)HBG2 [DGVbeta]
DECIPHERHBG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHBG2 
Mutations
ICGC Data PortalHBG2 
TCGA Data PortalHBG2 
Broad Tumor PortalHBG2
OASIS PortalHBG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHBG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHBG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)The Globin Gene Server
BioMutasearch HBG2
DgiDB (Drug Gene Interaction Database)HBG2
DoCM (Curated mutations)HBG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HBG2 (select a term)
intoGenHBG2
Cancer3DHBG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM141749    142250    613977   
Orphanet19638    20481    10601   
MedgenHBG2
Genetic Testing Registry HBG2
NextProtP69892 [Medical]
TSGene3048
GENETestsHBG2
Huge Navigator HBG2 [HugePedia]
snp3D : Map Gene to Disease3048
BioCentury BCIQHBG2
ClinGenHBG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3048
Chemical/Pharm GKB GenePA29207
Clinical trialHBG2
Miscellaneous
canSAR (ICR)HBG2 (select the gene name)
Probes
Litterature
PubMed158 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHBG2
EVEXHBG2
GoPubMedHBG2
iHOPHBG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:15:13 CEST 2017

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