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HBM (hemoglobin subunit mu)

Identity

Alias_namesHBAP2
hemoglobin, alpha pseudogene 2
hemoglobin, mu
Alias_symbol (synonym)HBK
Other alias
HGNC (Hugo) HBM
LocusID (NCBI) 3042
Atlas_Id 64187
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 165974 and ends at 166768 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HBM (16p13.3) / HBM (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HBM   4826
Cards
Entrez_Gene (NCBI)HBM  3042  hemoglobin subunit mu
AliasesHBAP2; HBK
GeneCards (Weizmann)HBM
Ensembl hg19 (Hinxton)ENSG00000206177 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206177 [Gene_View]  chr16:165974-166768 [Contig_View]  HBM [Vega]
ICGC DataPortalENSG00000206177
TCGA cBioPortalHBM
AceView (NCBI)HBM
Genatlas (Paris)HBM
WikiGenes3042
SOURCE (Princeton)HBM
Genetics Home Reference (NIH)HBM
Genomic and cartography
GoldenPath hg38 (UCSC)HBM  -     chr16:165974-166768 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HBM  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblHBM - 16p13.3 [CytoView hg19]  HBM - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIHBM [Mapview hg19]  HBM [Mapview hg38]
OMIM609639   
Gene and transcription
Genbank (Entrez)AY698022 BC035682 BC067870
RefSeq transcript (Entrez)NM_001003938
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HBM
Cluster EST : UnigeneHs.647389 [ NCBI ]
CGAP (NCI)Hs.647389
Alternative Splicing GalleryENSG00000206177
Gene ExpressionHBM [ NCBI-GEO ]   HBM [ EBI - ARRAY_EXPRESS ]   HBM [ SEEK ]   HBM [ MEM ]
Gene Expression Viewer (FireBrowse)HBM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3042
GTEX Portal (Tissue expression)HBM
Human Protein AtlasENSG00000206177-HBM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6B0K9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6B0K9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6B0K9
Splice isoforms : SwissVarQ6B0K9
PhosPhoSitePlusQ6B0K9
Domaine pattern : Prosite (Expaxy)GLOBIN (PS01033)   
Domains : Interpro (EBI)Globin    Globin-like    Globin/Proto    Haemoglobin_a-typ   
Domain families : Pfam (Sanger)Globin (PF00042)   
Domain families : Pfam (NCBI)pfam00042   
Conserved Domain (NCBI)HBM
DMDM Disease mutations3042
Blocks (Seattle)HBM
SuperfamilyQ6B0K9
Human Protein Atlas [tissue]ENSG00000206177-HBM [tissue]
Peptide AtlasQ6B0K9
HPRD13633
IPIIPI00456238   
Protein Interaction databases
DIP (DOE-UCLA)Q6B0K9
IntAct (EBI)Q6B0K9
FunCoupENSG00000206177
BioGRIDHBM
STRING (EMBL)HBM
ZODIACHBM
Ontologies - Pathways
QuickGOQ6B0K9
Ontology : AmiGOoxygen transporter activity  iron ion binding  hemoglobin complex  oxygen transport  oxygen binding  heme binding  extracellular exosome  
Ontology : EGO-EBIoxygen transporter activity  iron ion binding  hemoglobin complex  oxygen transport  oxygen binding  heme binding  extracellular exosome  
NDEx NetworkHBM
Atlas of Cancer Signalling NetworkHBM
Wikipedia pathwaysHBM
Orthology - Evolution
OrthoDB3042
GeneTree (enSembl)ENSG00000206177
Phylogenetic Trees/Animal Genes : TreeFamHBM
HOVERGENQ6B0K9
HOGENOMQ6B0K9
Homologs : HomoloGeneHBM
Homology/Alignments : Family Browser (UCSC)HBM
Gene fusions - Rearrangements
Fusion: Tumor Portal HBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHBM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HBM
dbVarHBM
ClinVarHBM
1000_GenomesHBM 
Exome Variant ServerHBM
ExAC (Exome Aggregation Consortium)ENSG00000206177
GNOMAD BrowserENSG00000206177
Genetic variants : HAPMAP3042
Genomic Variants (DGV)HBM [DGVbeta]
DECIPHERHBM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHBM 
Mutations
ICGC Data PortalHBM 
TCGA Data PortalHBM 
Broad Tumor PortalHBM
OASIS PortalHBM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHBM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHBM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HBM
DgiDB (Drug Gene Interaction Database)HBM
DoCM (Curated mutations)HBM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HBM (select a term)
intoGenHBM
Cancer3DHBM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609639   
Orphanet
MedgenHBM
Genetic Testing Registry HBM
NextProtQ6B0K9 [Medical]
TSGene3042
GENETestsHBM
Target ValidationHBM
Huge Navigator HBM [HugePedia]
snp3D : Map Gene to Disease3042
BioCentury BCIQHBM
ClinGenHBM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3042
Chemical/Pharm GKB GenePA29201
Clinical trialHBM
Miscellaneous
canSAR (ICR)HBM (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHBM
EVEXHBM
GoPubMedHBM
iHOPHBM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:50:15 CET 2017

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